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IMGVR_UViG_3300010413_000481-3300010413-Ga0136851_1002313215

Arc-Vir

IMGVR_UViG_3300010413_000481-3300010413-Ga0136851_1002313215

Identity

Kingdom:
archaea

Quality

74.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-127
PDB
Domain cluster: rep: NC_021791.1__YP_008241037.1__Phi12-1_gp58__00058__D3-129
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d37B01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.73 46.0 4.11e-01 92.9% 45.4%
3cddA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.67 49.0 4.27e-01 88.9% 51.1%
1y12B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.63 53.0 5.01e-01 93.7% 95.5%
3uezC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 30.0 3.63e-01 75.4% 67.5%
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.62 55.0 5.41e-01 96.8% 92.7%
5gxuB01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 36.0 3.70e-01 100.0% 59.0%
6a2bA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 34.0 3.94e-01 75.4% 75.3%
2k4qA00 4.10.410.40 Few Secondary Structures › Irregular › Factor Xa Inhibitor › 0.58 49.0 4.63e-01 92.1% 87.8%
4cu7A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 37.0 3.83e-01 76.2% 66.9%
3rbsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 30.0 3.52e-01 74.6% 72.7%
3py9A04 2.60.40.2560 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 30.0 3.74e-01 73.0% 85.9%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.54 44.0 4.32e-01 88.1% 92.6%
2g1dA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.54 33.0 3.60e-01 77.0% 75.5%
2bn4B03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 38.0 3.54e-01 99.2% 59.5%
3esiA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 37.0 3.80e-01 77.0% 74.2%
4gioA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 34.0 3.81e-01 96.0% 90.6%
1rm6B02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.50 30.0 3.26e-01 98.4% 69.2%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3218632 77.1.1.0 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.73 31.0 3.66e-01 100.0% 56.4%
184486 1.1.13.26 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › GpP-like_1st 0.71 45.0 5.47e-01 92.1% 100.0%
3311358 304.8.1.67 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7377 0.68 38.0 3.81e-01 77.0% 52.3%
4344991 1.1.5.35 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › YwpF 0.68 52.0 5.17e-01 92.9% 77.7%
1178487 1.1.13.26 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › GpP-like_1st 0.67 50.0 5.60e-01 90.5% 100.0%
3659065 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.66 38.0 4.24e-01 75.4% 72.0%
4157825 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.63 55.0 5.53e-01 94.4% 96.2%
4988102 1.1.13.47 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like 0.62 51.0 5.39e-01 94.4% 100.0%
3257466 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 34.0 3.78e-01 77.0% 70.0%
184718 1.1.13.16 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_TTP_12 0.58 49.0 4.63e-01 92.1% 87.8%
3587590 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.56 37.0 4.02e-01 77.0% 81.0%
3931503 1.1.7.47 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Aquarius_N_2nd 0.54 48.0 4.26e-01 96.8% 82.8%
3315975 1.1.7.47 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Aquarius_N_2nd 0.54 47.0 4.27e-01 96.8% 84.0%
3253959 4081.1.1.0 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.53 37.0 3.36e-01 76.2% 54.5%
5056154 4081.1.1.0 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.51 35.0 3.33e-01 75.4% 57.4%
3216926 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 39.0 3.72e-01 83.3% 68.7%
3610122 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 33.0 3.76e-01 76.2% 92.2%
3488710 319.1.1.5 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PIH1_CS 0.50 35.0 4.00e-01 73.8% 100.0%
D2 medium residues 130-203
PDB