←Back to structures

IMGVR_UViG_3300010413_001194-3300010413-Ga0136851_100289113

Arc-Vir

IMGVR_UViG_3300010413_001194-3300010413-Ga0136851_100289113

Identity

Kingdom:
archaea

Quality

93.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 83-146
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5eyaF00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.56 32.0 3.06e-01 84.4% 44.7%
4jedA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 44.0 3.97e-01 92.2% 75.5%
1zodA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 41.0 3.34e-01 87.5% 73.8%
1zakA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 44.0 3.15e-01 95.3% 94.1%
4dsfA04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.54 38.0 3.23e-01 73.4% 58.2%
5jpoD01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 40.0 3.77e-01 84.4% 91.5%
1ak2A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 42.0 3.08e-01 95.3% 97.7%
1szsA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 43.0 3.27e-01 92.2% 73.9%
3oksA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 43.0 3.25e-01 93.8% 67.0%
5g4iB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 42.0 3.21e-01 89.1% 73.8%
4nu0A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 42.0 3.06e-01 95.3% 99.1%
3dxvA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 42.0 3.26e-01 92.2% 80.3%
2qrdE01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.51 42.0 3.05e-01 90.6% 40.6%
4nxtA01 1.10.1410.40 Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › 0.51 44.0 3.41e-01 96.9% 57.2%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3921366 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.63 42.0 4.03e-01 73.4% 60.0%
3946051 2485.1.1.81 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › TraF 0.58 40.0 3.29e-01 73.4% 87.2%
4420155 3016.1.1.2 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.57 45.0 3.79e-01 87.5% 89.1%
3895727 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.56 40.0 4.35e-01 89.1% 100.0%
3343332 170.1.1.26 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › DUF7746 0.55 45.0 4.39e-01 90.6% 98.6%
3895660 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.55 41.0 3.93e-01 90.6% 69.3%
3701805 4203.1.1.0 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like 0.54 29.0 3.18e-01 70.3% 60.0%
5044949 241.9.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like 0.54 41.0 3.49e-01 87.5% 91.7%
3309680 170.1.1.26 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › DUF7746 0.54 47.0 3.95e-01 100.0% 93.6%
3499037 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.53 45.0 2.74e-01 93.8% 19.0%
None — 0.53 36.0 2.82e-01 73.4% 87.9%
3516174 5050.1.1.31 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › SLC52_ribofla_tr 0.53 44.0 3.10e-01 98.4% 77.9%
3403707 3016.1.1.2 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.52 40.0 3.34e-01 85.9% 87.5%
3600710 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 34.0 2.33e-01 70.3% 40.8%
3608727 386.1.1.57 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › TRAFD1-XIAF1_ZnF 0.50 31.0 3.47e-01 76.6% 86.7%
5083270 7577.1.1.2 ↗ a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_3 0.50 43.0 2.65e-01 96.9% 51.2%
None — 0.50 42.0 3.01e-01 100.0% 91.1%
3486484 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 38.0 2.67e-01 85.9% 80.4%
D2 medium residues 10-45
PDB
Domain cluster: representative