←Back to structures
IMGVR_UViG_3300010413_001809-3300010413-Ga0136851_101452348
Arc-VirIMGVR_UViG_3300010413_001809-3300010413-Ga0136851_101452348
Identity
- Kingdom:
- archaea
Quality
86.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 25-97
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1a7gE00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.70 | 55.0 | 5.32e-01 | 84.9% | 98.8% |
| 2bopA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.69 | 53.0 | 5.06e-01 | 83.6% | 96.5% |
| 3lnlB02 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.68 | 53.0 | 4.97e-01 | 83.6% | 92.0% |
| 2ww4A02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.67 | 54.0 | 4.57e-01 | 86.3% | 93.3% |
| 4ozjA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 52.0 | 4.60e-01 | 83.6% | 80.8% |
| 1kwmA01 | 3.30.70.340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like | 0.67 | 51.0 | 4.86e-01 | 84.9% | 93.2% |
| 1mwqA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.65 | 49.0 | 4.50e-01 | 83.6% | 95.0% |
| 4ye5A01 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.65 | 54.0 | 4.09e-01 | 95.9% | 81.1% |
| 3d68A01 | 3.30.70.340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like | 0.65 | 50.0 | 4.66e-01 | 84.9% | 85.9% |
| 3mahA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.63 | 46.0 | 4.76e-01 | 79.5% | 100.0% |
| 1u0sA00 | 3.30.70.1110 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Histidine kinase CheA-like, P2 response regulator-binding domain | 0.63 | 47.0 | 4.51e-01 | 82.2% | 97.7% |
| 1vbkA01 | 3.30.70.1510 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › THUMP domain-like | 0.63 | 48.0 | 4.64e-01 | 82.2% | 96.4% |
| 2vd3A03 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 47.0 | 4.70e-01 | 82.2% | 94.6% |
| 3ui3A02 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 48.0 | 4.35e-01 | 83.6% | 85.7% |
| 2wbmA03 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 47.0 | 4.81e-01 | 83.6% | 100.0% |
| 6k2eA01 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 45.0 | 4.68e-01 | 80.8% | 97.1% |
| 3rrkA01 | 3.30.70.2170 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 44.0 | 4.43e-01 | 78.1% | 100.0% |
| 7ahbB01 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.60 | 43.0 | 4.70e-01 | 76.7% | 100.0% |
| 2dy1A03 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.60 | 47.0 | 4.68e-01 | 84.9% | 96.1% |
| 4mz0B05 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.60 | 45.0 | 4.66e-01 | 82.2% | 95.5% |
| 1gpjA01 | 3.30.460.30 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Glutamyl-tRNA reductase, N-terminal domain | 0.59 | 46.0 | 3.79e-01 | 87.7% | 55.9% |
| 2z1aA02 | 3.90.780.10 | Alpha Beta › Alpha-Beta Complex › 5'-nucleotidase; domain 2 › 5'-Nucleotidase, C-terminal domain | 0.58 | 44.0 | 3.31e-01 | 84.9% | 68.8% |
| 4fxdA05 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.58 | 51.0 | 4.38e-01 | 98.6% | 81.2% |
| 1s7iA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.58 | 44.0 | 3.79e-01 | 84.9% | 92.7% |
| 5k9fA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 44.0 | 4.01e-01 | 84.9% | 93.2% |
| 1r6vA02 | 3.30.70.80 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 | 0.57 | 43.0 | 4.31e-01 | 84.9% | 85.9% |
| 2hg4D03 | 3.40.366.10 | Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › Malonyl-Coenzyme A Acyl Carrier Protein, domain 2 | 0.57 | 44.0 | 2.94e-01 | 84.9% | 23.5% |
| 6spbZ00 | 3.30.1390.20 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30/L7 | 0.57 | 40.0 | 4.36e-01 | 79.5% | 98.2% |
| 3afgB01 | 3.30.70.80 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 | 0.57 | 43.0 | 4.16e-01 | 84.9% | 79.3% |
| 2jfdA03 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.57 | 43.0 | 4.50e-01 | 82.2% | 92.4% |
| 3tzyA02 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.57 | 43.0 | 4.42e-01 | 83.6% | 91.4% |
| 1vq8W01 | 3.30.1390.20 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30/L7 | 0.54 | 43.0 | 4.01e-01 | 91.8% | 85.7% |
| 1lk5A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.54 | 38.0 | 3.79e-01 | 76.7% | 96.2% |
| 1whvA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.54 | 45.0 | 4.15e-01 | 98.6% | 88.0% |
| 2v8pA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.53 | 40.0 | 3.56e-01 | 84.9% | 97.4% |
| 1jg8A02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.53 | 44.0 | 4.09e-01 | 95.9% | 93.8% |
| 3jyuB01 | 3.30.2230.10 | Alpha Beta › 2-Layer Sandwich › DUSP-like › DUSP-like | 0.51 | 40.0 | 3.42e-01 | 87.7% | 83.5% |
| 4melA01 | 3.30.2230.10 | Alpha Beta › 2-Layer Sandwich › DUSP-like › DUSP-like | 0.51 | 39.0 | 3.45e-01 | 84.9% | 77.5% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4980941 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.71 | 56.0 | 3.87e-01 | 86.3% | 39.2% |
| 4080191 | 304.1.1.1 ↗ | a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C | 0.71 | 55.0 | 4.77e-01 | 83.6% | 96.4% |
| 4021179 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.70 | 58.0 | 3.41e-01 | 89.0% | 56.1% |
| 5007506 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.69 | 54.0 | 5.13e-01 | 83.6% | 78.8% |
| 4996585 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.69 | 54.0 | 3.75e-01 | 86.3% | 39.2% |
| 5022386 | 304.1.1.1 ↗ | a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C | 0.67 | 53.0 | 4.49e-01 | 84.9% | 95.8% |
| 5033768 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.67 | 52.0 | 5.41e-01 | 83.6% | 100.0% |
| 3186098 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.67 | 53.0 | 3.79e-01 | 87.7% | 45.8% |
| 4037378 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.66 | 51.0 | 5.36e-01 | 82.2% | 98.5% |
| 4097274 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.63 | 49.0 | 5.17e-01 | 83.6% | 96.9% |
| 4578112 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.63 | 49.0 | 4.61e-01 | 84.9% | 85.6% |
| 3974593 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.63 | 50.0 | 4.76e-01 | 86.3% | 90.6% |
| 3031022 | 304.56.1.1 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › Cas_Cas2CT1978 | 0.63 | 52.0 | 4.89e-01 | 94.5% | 79.6% |
| 5016129 | 101.1.9.75 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF61 | 0.63 | 46.0 | 4.75e-01 | 89.0% | 84.1% |
| 3290829 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.62 | 48.0 | 5.02e-01 | 82.2% | 95.4% |
| 3289257 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.62 | 48.0 | 4.62e-01 | 84.9% | 90.6% |
| 4065065 | 304.8.1.24 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF2129 | 0.62 | 49.0 | 4.98e-01 | 84.9% | 94.3% |
| 3286891 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.62 | 45.0 | 4.85e-01 | 76.7% | 100.0% |
| 3689276 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.62 | 49.0 | 4.87e-01 | 84.9% | 92.0% |
| 4064296 | 304.24.1.25 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › DUF2129 | 0.62 | 48.0 | 4.95e-01 | 84.9% | 94.3% |
| 3590743 | 304.3.1.14 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › DrrA1-3_C | 0.62 | 48.0 | 5.04e-01 | 83.6% | 100.0% |
| 4027647 | 3122.1.1.0 ↗ | a+b complex topology › MESD › MESD › MESD | 0.62 | 54.0 | 4.71e-01 | 100.0% | 79.1% |
| 5035614 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.62 | 44.0 | 4.73e-01 | 76.7% | 100.0% |
| 3286151 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.61 | 47.0 | 4.96e-01 | 83.6% | 95.4% |
| 4274925 | 101.1.9.75 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF61 | 0.61 | 45.0 | 4.67e-01 | 89.0% | 89.2% |
| 5071792 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.60 | 47.0 | 4.68e-01 | 84.9% | 97.3% |
| 4157124 | 304.8.1.24 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF2129 | 0.60 | 46.0 | 4.86e-01 | 83.6% | 100.0% |
| 3589166 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.60 | 44.0 | 4.73e-01 | 78.1% | 100.0% |
| 5057426 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.60 | 43.0 | 4.67e-01 | 82.2% | 93.3% |
| 4857408 | 304.56.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like | 0.60 | 49.0 | 4.95e-01 | 94.5% | 96.0% |
| 3959706 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.60 | 46.0 | 4.83e-01 | 83.6% | 98.5% |
| 4426624 | 304.56.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 | 0.59 | 45.0 | 4.37e-01 | 84.9% | 83.5% |
| 4013619 | 887.1.1.0 ↗ | a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e | 0.59 | 45.0 | 4.38e-01 | 83.6% | 76.2% |
| 4038263 | 887.1.1.1 ↗ | a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal_L30 | 0.59 | 43.0 | 4.61e-01 | 82.2% | 98.3% |
| 3783820 | 887.1.1.1 ↗ | a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal_L30 | 0.58 | 44.0 | 4.26e-01 | 83.6% | 71.8% |
| 3338152 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.58 | 40.0 | 4.05e-01 | 71.2% | 74.3% |
| 3282379 | 304.163.1.4 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF30808 | 0.58 | 43.0 | 4.58e-01 | 80.8% | 100.0% |
| 5022446 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.58 | 45.0 | 4.69e-01 | 84.9% | 96.9% |
| 4170754 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.58 | 42.0 | 4.52e-01 | 84.9% | 96.7% |
| 3989567 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.58 | 43.0 | 4.64e-01 | 82.2% | 100.0% |
| 3286231 | 304.11.1.1 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Acyl_transf_1 | 0.57 | 44.0 | 4.42e-01 | 84.9% | 96.0% |
| 3827373 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.56 | 42.0 | 3.96e-01 | 84.9% | 64.2% |
| 3064368 | 807.1.1.1 ↗ | a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD | 0.56 | 43.0 | 4.46e-01 | 84.9% | 89.9% |
| 4102298 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.56 | 42.0 | 4.25e-01 | 84.9% | 92.0% |
| 3740598 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 43.0 | 3.42e-01 | 84.9% | 57.4% |
| 3791785 | 220.1.1.125 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PLEKHM2 | 0.55 | 45.0 | 3.47e-01 | 87.7% | 75.0% |
| 3705019 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.55 | 41.0 | 3.45e-01 | 82.2% | 65.2% |
| 4217703 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.54 | 42.0 | 3.96e-01 | 87.7% | 77.9% |
| 3930342 | 822.1.1.2 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 | 0.54 | 37.0 | 4.04e-01 | 98.6% | 98.2% |
| 4986112 | 205.1.1.16 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 | 0.53 | 44.0 | 4.12e-01 | 100.0% | 94.0% |
| 4821040 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.53 | 45.0 | 3.26e-01 | 100.0% | 75.5% |
| 3689135 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.51 | 38.0 | 3.66e-01 | 83.6% | 82.2% |
| 3943126 | 3115.4.1.0 ↗ | a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 | 0.51 | 37.0 | 3.92e-01 | 83.6% | 89.2% |