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IMGVR_UViG_3300010413_002622-3300010413-Ga0136851_100801423
Arc-VirIMGVR_UViG_3300010413_002622-3300010413-Ga0136851_100801423
Identity
- Kingdom:
- archaea
Quality
83.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-62
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6ywnA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.87 | 44.0 | 3.30e-01 | 82.0% | 23.1% |
| 8gj8A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.83 | 46.0 | 2.86e-01 | 78.0% | 11.2% |
| 2fggA01 | 3.30.160.240 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 | 0.78 | 54.0 | 4.66e-01 | 100.0% | 48.0% |
| 3p0cA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.70 | 52.0 | 4.09e-01 | 82.0% | 40.5% |
| 1x9mA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.69 | 52.0 | 3.30e-01 | 80.0% | 79.2% |
| 2im9A02 | 2.30.260.10 | Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain | 0.69 | 49.0 | 3.48e-01 | 80.0% | 25.9% |
| 4cy8A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.67 | 45.0 | 2.88e-01 | 70.0% | 48.6% |
| 3venA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.66 | 50.0 | 3.14e-01 | 80.0% | 46.9% |
| 4ntqB00 | 3.30.2450.20 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.61 | 44.0 | 3.21e-01 | 78.0% | 44.1% |
| 5hy7B02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.60 | 38.0 | 2.39e-01 | 78.0% | 10.2% |
| 6fezA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.58 | 39.0 | 3.24e-01 | 72.0% | 86.2% |
| 3lxuX01 | 3.40.50.200 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain | 0.58 | 48.0 | 2.96e-01 | 94.0% | 77.5% |
| 2nmlA00 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.57 | 45.0 | 3.62e-01 | 86.0% | 95.0% |
| 1vq0A02 | 3.90.1280.10 | Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like | 0.57 | 38.0 | 3.72e-01 | 78.0% | 61.4% |
| 1pguA02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 44.0 | 2.83e-01 | 94.0% | 63.3% |
| 7ejoB01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.56 | 39.0 | 3.37e-01 | 74.0% | 98.8% |
| 2dixA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.56 | 45.0 | 3.93e-01 | 90.0% | 60.3% |
| 4arvA02 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.56 | 50.0 | 3.68e-01 | 100.0% | 72.2% |
| 2hhiA01 | 3.30.565.40 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like | 0.56 | 45.0 | 3.49e-01 | 94.0% | 51.7% |
| 3weeB03 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.56 | 43.0 | 3.39e-01 | 90.0% | 66.1% |
| 4p6zM01 | 3.30.450.60 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.55 | 43.0 | 3.21e-01 | 90.0% | 34.7% |
| 4p78C00 | 3.30.920.30 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. | 0.55 | 41.0 | 3.75e-01 | 80.0% | 72.7% |
| 4tm3A00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 46.0 | 2.69e-01 | 98.0% | 13.5% |
| 1mgtA01 | 3.30.160.70 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain | 0.52 | 42.0 | 3.46e-01 | 88.0% | 54.5% |
| 3lp9A00 | 2.110.10.10 | Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain | 0.52 | 36.0 | 2.44e-01 | 76.0% | 69.6% |
| 5aykA07 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 37.0 | 2.97e-01 | 82.0% | 78.3% |
| 2cqaA01 | 2.40.50.360 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain | 0.51 | 34.0 | 3.12e-01 | 72.0% | 78.4% |
| 4m7xA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 35.0 | 2.95e-01 | 74.0% | 86.8% |
| 5os9A00 | 2.40.330.10 | Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain | 0.50 | 34.0 | 2.73e-01 | 72.0% | 37.4% |
| 3ulbA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 42.0 | 3.50e-01 | 90.0% | 56.6% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5001282 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.75 | 51.0 | 3.54e-01 | 98.0% | 24.1% |
| 4944107 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.74 | 46.0 | 3.24e-01 | 80.0% | 20.6% |
| 3394577 | 7039.1.1.1 ↗ | a+b complex topology › Helical domain of PCIF1/CAPAM › Helical domain of PCIF1/CAPAM › Helical domain of PCIF1/CAPAM › PCIF1_WW | 0.72 | 55.0 | 3.49e-01 | 82.0% | 17.8% |
| 3998167 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.72 | 50.0 | 3.19e-01 | 74.0% | 14.8% |
| 3955707 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.72 | 49.0 | 4.20e-01 | 74.0% | 44.7% |
| 5017728 | 4967.1.1.11 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › GIIM | 0.71 | 45.0 | 3.46e-01 | 90.0% | 27.4% |
| 3591633 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.69 | 63.0 | 4.79e-01 | 100.0% | 45.5% |
| 402817 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.68 | 50.0 | 4.02e-01 | 82.0% | 42.5% |
| 3931122 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.68 | 48.0 | 3.84e-01 | 74.0% | 92.6% |
| 3694428 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.68 | 47.0 | 2.77e-01 | 74.0% | 76.9% |
| 2426538 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.67 | 55.0 | 4.19e-01 | 100.0% | 38.8% |
| 4966836 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 46.0 | 4.56e-01 | 74.0% | 67.3% |
| 3500755 | 304.55.1.14 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Y2_Tnp | 0.66 | 48.0 | 3.15e-01 | 78.0% | 19.0% |
| 5052753 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.66 | 45.0 | 3.14e-01 | 78.0% | 22.5% |
| 3650304 | 66.1.1.0 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain | 0.65 | 41.0 | 3.87e-01 | 70.0% | 51.7% |
| 3281618 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.62 | 40.0 | 3.25e-01 | 74.0% | 33.0% |
| 3641506 | 3957.1.1.0 ↗ | a+b two layers › EKC/KEOPS complex subunit GON7 › EKC/KEOPS complex subunit GON7 › EKC/KEOPS complex subunit GON7 | 0.60 | 43.0 | 3.62e-01 | 76.0% | 72.9% |
| 3280641 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.60 | 39.0 | 3.12e-01 | 74.0% | 33.0% |
| 3299249 | 6166.1.1.1 ↗ | alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24 | 0.60 | 48.0 | 3.15e-01 | 88.0% | 60.0% |
| 4126006 | 325.1.7.14 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RPOC_hybrid | 0.59 | 43.0 | 3.98e-01 | 78.0% | 80.0% |
| 4030552 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.59 | 42.0 | 3.59e-01 | 76.0% | 69.4% |
| 3805156 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.58 | 52.0 | 3.97e-01 | 98.0% | 48.2% |
| None | — | 0.58 | 45.0 | 2.74e-01 | 88.0% | 83.2% | |
| 3882038 | 223.2.1.3 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s | 0.58 | 52.0 | 3.64e-01 | 100.0% | 45.8% |
| 3600598 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.58 | 51.0 | 3.64e-01 | 96.0% | 53.6% |
| 3623169 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.58 | 39.0 | 3.15e-01 | 80.0% | 34.3% |
| 4587696 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.57 | 39.0 | 3.15e-01 | 72.0% | 35.0% |
| 3260588 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.57 | 37.0 | 3.79e-01 | 70.0% | 68.0% |
| 3544618 | 4292.2.1.0 ↗ | a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain | 0.57 | 44.0 | 3.82e-01 | 88.0% | 55.3% |
| 4227222 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.57 | 39.0 | 3.53e-01 | 72.0% | 60.0% |
| 4430538 | 4.6.1.6 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM | 0.57 | 38.0 | 3.44e-01 | 72.0% | 58.7% |
| 4883391 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.57 | 39.0 | 3.25e-01 | 74.0% | 89.2% |
| 3656401 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 39.0 | 3.53e-01 | 92.0% | 52.0% |
| 5052285 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 47.0 | 3.55e-01 | 90.0% | 42.9% |
| 3703262 | 226.1.1.1 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB | 0.54 | 39.0 | 3.27e-01 | 86.0% | 40.0% |
| 3164102 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.54 | 40.0 | 4.19e-01 | 84.0% | 86.7% |
| 3927286 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.54 | 45.0 | 3.97e-01 | 94.0% | 100.0% |
| 3536326 | 1073.1.1.0 ↗ | alpha arrays › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) | 0.53 | 38.0 | 3.20e-01 | 76.0% | 70.0% |
| 5000498 | 896.1.1.1 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e | 0.51 | 36.0 | 3.39e-01 | 82.0% | 61.7% |