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IMGVR_UViG_3300010413_002660-3300010413-Ga0136851_1000208148
Arc-VirIMGVR_UViG_3300010413_002660-3300010413-Ga0136851_1000208148
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-187
Domain cluster:
rep: pig_ID_3158_F95_scaffold_0_curated_closed_complete_prodigal-single.1__X__X__00166__D3-183
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03690.19 best | MYG1_exonuc | 118.3 | 7.70e-34 | 99.5% | 61.0% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3c18A02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.51 | 31.0 | 3.67e-01 | 91.4% | 89.8% |
| 1dbqA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 32.0 | 3.70e-01 | 93.5% | 86.6% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4122163 | 2006.1.2.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › UPF0160 | 0.92 | 78.0 | 8.30e-01 | 95.2% | 97.0% |
| 3480438 | 2006.1.2.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases | 0.90 | 84.0 | 8.28e-01 | 95.2% | 99.0% |
| 3725387 | 2006.1.2.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › UPF0160 | 0.90 | 83.0 | 8.03e-01 | 94.6% | 100.0% |
| 3601004 | 2006.1.2.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases | 0.88 | 78.0 | 7.48e-01 | 94.1% | 81.5% |
| 3706935 | 2006.1.2.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › UPF0160 | 0.88 | 82.0 | 7.76e-01 | 95.7% | 87.9% |
| 3577563 | 2006.1.2.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › UPF0160 | 0.75 | 61.0 | 6.60e-01 | 89.8% | 95.1% |
| 5035706 | 2006.1.2.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases | 0.72 | 55.0 | 5.62e-01 | 91.9% | 81.7% |
| 3242954 | 3939.1.1.161 ↗ | alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › Mitofilin | 0.59 | 31.0 | 3.97e-01 | 88.7% | 86.2% |
| 3693018 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.54 | 32.0 | 3.50e-01 | 91.9% | 70.0% |
| 4034385 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.52 | 31.0 | 3.89e-01 | 98.4% | 99.1% |
D2
high
residues 193-296
Domain cluster:
rep: FFC_09252017_16_scaffold_4_prodigal-single.1__X__X__00016__D227-315
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03690.19 best | MYG1_exonuc | 66.2 | 5.50e-18 | 99.0% | 34.0% |
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gnxA02 | 3.30.450.240 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.64 | 38.0 | 3.74e-01 | 89.4% | 55.0% |
| 3k2tA01 | 3.30.505.50 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain | 0.64 | 30.0 | 4.30e-01 | 76.9% | 100.0% |
| 3mazA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.62 | 47.0 | 4.79e-01 | 95.2% | 82.8% |
| 2oq1A03 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.62 | 46.0 | 4.67e-01 | 95.2% | 80.0% |
| 3cz8A02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.61 | 22.0 | 2.95e-01 | 81.7% | 57.9% |
| 2eobA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.61 | 44.0 | 4.29e-01 | 95.2% | 69.0% |
| 1luiA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.60 | 48.0 | 4.76e-01 | 96.2% | 81.5% |
| 3devA02 | 3.10.310.30 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.60 | 53.0 | 5.15e-01 | 100.0% | 87.1% |
| 7ykvB02 | 3.10.310.30 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.60 | 51.0 | 5.19e-01 | 100.0% | 97.0% |
| 5t5sA01 | 3.10.310.40 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.57 | 50.0 | 4.73e-01 | 100.0% | 87.6% |
| 1gt7A00 | 3.40.225.10 | Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain | 0.55 | 48.0 | 3.60e-01 | 100.0% | 82.1% |
| 2irpA00 | 3.40.225.10 | Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain | 0.54 | 45.0 | 3.63e-01 | 92.3% | 88.3% |
| 3s1sA01 | 3.90.1570.30 | Alpha Beta › Alpha-Beta Complex › tt1808, chain A › | 0.53 | 47.0 | 4.05e-01 | 100.0% | 69.2% |
| 6btdA00 | 3.40.225.10 | Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain | 0.53 | 46.0 | 3.76e-01 | 100.0% | 84.2% |
| 1g0uE00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.52 | 43.0 | 3.44e-01 | 93.3% | 64.8% |
| 3vx8A02 | 3.40.140.70 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 N-terminal domain | 0.52 | 37.0 | 3.24e-01 | 74.0% | 76.2% |
| 2fk5A00 | 3.40.225.10 | Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain | 0.52 | 45.0 | 3.75e-01 | 100.0% | 88.2% |
| 1jdiA00 | 3.40.225.10 | Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain | 0.52 | 45.0 | 3.60e-01 | 100.0% | 83.4% |
| 3ijmA00 | 3.90.1570.20 | Alpha Beta › Alpha-Beta Complex › tt1808, chain A › | 0.51 | 40.0 | 3.54e-01 | 100.0% | 58.9% |
| 3k1lA02 | 3.30.457.30 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › | 0.51 | 34.0 | 3.62e-01 | 100.0% | 80.0% |
| 3lmmA03 | 3.30.565.60 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › | 0.50 | 39.0 | 3.35e-01 | 83.7% | 98.8% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3636114 | 5104.1.1.4 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › UPF0160 | 0.92 | 89.0 | 7.62e-01 | 100.0% | 89.3% |
| 3480439 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.91 | 88.0 | 7.64e-01 | 100.0% | 89.0% |
| 4257915 | 5104.1.1.4 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › UPF0160 | 0.91 | 88.0 | 7.87e-01 | 100.0% | 80.7% |
| 4026396 | 5104.1.1.4 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › UPF0160 | 0.91 | 87.0 | 7.80e-01 | 100.0% | 86.7% |
| 3937442 | 5104.1.1.4 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › UPF0160 | 0.90 | 85.0 | 7.67e-01 | 99.0% | 89.6% |
| 3597460 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.90 | 86.0 | 7.88e-01 | 100.0% | 89.2% |
| 3494276 | 5104.1.1.4 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › UPF0160 | 0.89 | 86.0 | 7.95e-01 | 100.0% | 87.2% |
| 3782612 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.62 | 56.0 | 4.90e-01 | 99.0% | 89.0% |
| 4943163 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.61 | 53.0 | 5.00e-01 | 100.0% | 79.8% |
| 5070153 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.60 | 51.0 | 4.92e-01 | 100.0% | 82.6% |
| 5024295 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.60 | 53.0 | 4.98e-01 | 100.0% | 83.1% |
| 4041870 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.60 | 53.0 | 5.11e-01 | 100.0% | 90.8% |
| 3477642 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.59 | 45.0 | 4.36e-01 | 100.0% | 70.8% |
| 4271393 | 306.2.2.1 ↗ | a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › Hypothetical protein SAV1430 › Nfu_N | 0.59 | 43.0 | 4.29e-01 | 76.9% | 78.2% |
| 5074042 | 2003.1.7.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › 5-FTHF_cyc-lig | 0.58 | 36.0 | 3.00e-01 | 95.2% | 34.9% |
| 3831694 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.57 | 51.0 | 4.67e-01 | 100.0% | 84.8% |
| 4947495 | 3983.1.1.0 ↗ | a/b three-layered sandwiches › CRISPR-associated Csx3 › CRISPR-associated Csx3 › CRISPR-associated Csx3 | 0.57 | 35.0 | 3.62e-01 | 89.4% | 65.3% |
| 5051114 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.57 | 50.0 | 4.91e-01 | 100.0% | 90.9% |
| 3973095 | 306.1.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › Glucose permease domain IIB › Glucose permease domain IIB | 0.55 | 33.0 | 3.77e-01 | 76.0% | 81.3% |
| 3181542 | 207.1.1.33 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › DUF6546 | 0.54 | 45.0 | 3.05e-01 | 90.4% | 72.1% |
| 5021150 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.53 | 43.0 | 4.36e-01 | 93.3% | 91.0% |
| 4366425 | 281.1.1.1 ↗ | a+b three layers › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › Aldolase_II | 0.53 | 46.0 | 3.53e-01 | 100.0% | 84.6% |
| 5031873 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.52 | 47.0 | 4.16e-01 | 100.0% | 69.7% |
| 4654790 | 281.1.1.1 ↗ | a+b three layers › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › Aldolase_II | 0.52 | 44.0 | 3.54e-01 | 92.3% | 90.6% |
| 4650778 | 2008.1.1.20 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Uma2 | 0.52 | 41.0 | 3.43e-01 | 100.0% | 48.9% |
| 3594589 | 2003.1.9.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins | 0.51 | 45.0 | 2.69e-01 | 100.0% | 29.6% |
| 4997753 | 2003.6.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like | 0.51 | 41.0 | 2.81e-01 | 100.0% | 23.3% |
| 5027507 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.51 | 39.0 | 2.75e-01 | 100.0% | 24.2% |
| 2485376 | 2008.1.1.20 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Uma2 | 0.51 | 40.0 | 3.35e-01 | 100.0% | 49.4% |
| 4027092 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.51 | 46.0 | 4.58e-01 | 98.1% | 99.1% |
| 4967827 | 281.1.1.1 ↗ | a+b three layers › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › Aldolase_II | 0.50 | 42.0 | 3.55e-01 | 92.3% | 88.9% |
| 3922307 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.50 | 42.0 | 3.42e-01 | 99.0% | 47.5% |