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IMGVR_UViG_3300011169_000004-3300011169-Ga0136569_10032419
Arc-VirIMGVR_UViG_3300011169_000004-3300011169-Ga0136569_10032419
Identity
- Kingdom:
- archaea
Quality
91.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 50-133
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dljA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 53.0 | 4.02e-01 | 98.8% | 95.6% |
| 1kf6A04 | 4.10.80.40 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain | 0.60 | 27.0 | 3.78e-01 | 76.2% | 97.1% |
| 2lxxA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.59 | 51.0 | 4.29e-01 | 98.8% | 83.6% |
| 4alzA03 | 3.30.70.1770 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 41.0 | 4.51e-01 | 91.7% | 98.4% |
| 2b99C00 | 3.40.50.960 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase | 0.57 | 42.0 | 3.46e-01 | 82.1% | 42.8% |
| 3ihlB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 42.0 | 3.18e-01 | 100.0% | 29.7% |
| 2mv2A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.57 | 49.0 | 4.14e-01 | 98.8% | 82.4% |
| 3pvlA02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.56 | 31.0 | 3.01e-01 | 70.2% | 46.9% |
| 4mfzA02 | 3.40.630.120 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › | 0.55 | 40.0 | 3.33e-01 | 82.1% | 43.5% |
| 4ry8C02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 37.0 | 3.03e-01 | 100.0% | 35.5% |
| 2vk2A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 37.0 | 3.01e-01 | 100.0% | 35.2% |
| 2lpeA01 | 6.10.140.1120 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 31.0 | 3.27e-01 | 82.1% | 61.5% |
| 5tjjB02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.53 | 41.0 | 3.17e-01 | 81.0% | 93.3% |
| 2d7vB00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.53 | 40.0 | 3.37e-01 | 83.3% | 60.8% |
| 3c19A01 | 3.30.70.1380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transcriptional regulatory protein pf0864 domain like | 0.52 | 41.0 | 3.94e-01 | 86.9% | 81.8% |
| 1h91A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 42.0 | 3.38e-01 | 91.7% | 86.1% |
| 1ntyA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 37.0 | 3.30e-01 | 75.0% | 95.2% |
| 3n2qA02 | 3.30.300.190 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.52 | 42.0 | 3.75e-01 | 91.7% | 62.1% |
| 1vw5B00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.52 | 41.0 | 3.80e-01 | 89.3% | 81.4% |
| 2hzrA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 42.0 | 3.50e-01 | 92.9% | 91.3% |
| 4mh4A02 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.52 | 40.0 | 3.92e-01 | 86.9% | 100.0% |
| 2o28A01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 44.0 | 3.65e-01 | 100.0% | 92.5% |
| 2ql8A00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.51 | 43.0 | 3.71e-01 | 97.6% | 91.4% |
| 3e23A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 36.0 | 2.83e-01 | 76.2% | 42.9% |
| 7r3eB02 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.51 | 40.0 | 3.32e-01 | 89.3% | 96.3% |
| 2onfA01 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.50 | 38.0 | 3.43e-01 | 86.9% | 73.1% |
| 4m1aA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.50 | 41.0 | 3.84e-01 | 91.7% | 77.6% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4940727 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.70 | 43.0 | 4.05e-01 | 82.1% | 51.0% |
| 1222168 | 11.1.1.108 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 | 0.61 | 26.0 | 3.38e-01 | 71.4% | 67.4% |
| 3994958 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.61 | 53.0 | 4.58e-01 | 98.8% | 87.4% |
| 3369320 | 192.18.1.0 ↗ | alpha bundles › Long alpha-hairpin › MxiH-like › MxiH-like | 0.58 | 37.0 | 2.38e-01 | 100.0% | 12.3% |
| 281 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.58 | 27.0 | 3.01e-01 | 71.4% | 53.0% |
| 3986529 | 327.13.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › PrgH | 0.58 | 42.0 | 4.07e-01 | 92.9% | 68.4% |
| None | — | 0.57 | 39.0 | 3.34e-01 | 100.0% | 41.4% | |
| 4039776 | 243.3.1.48 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › GlfB_C | 0.57 | 45.0 | 3.77e-01 | 89.3% | 95.6% |
| 5050420 | 324.1.1.0 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like | 0.56 | 44.0 | 4.03e-01 | 88.1% | 90.0% |
| 5043596 | 304.15.1.0 ↗ | a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain | 0.55 | 43.0 | 3.92e-01 | 84.5% | 81.7% |
| 3587593 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.55 | 43.0 | 4.38e-01 | 85.7% | 93.8% |
| 5074066 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.55 | 37.0 | 3.23e-01 | 70.2% | 55.0% |
| 4930275 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.55 | 44.0 | 4.33e-01 | 88.1% | 94.4% |
| 4988199 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.55 | 44.0 | 3.50e-01 | 89.3% | 56.8% |
| None | — | 0.55 | 47.0 | 3.21e-01 | 98.8% | 29.1% | |
| 4384399 | 2003.1.5.138 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › UPF0020+Methyltrans_SAM | 0.55 | 47.0 | 2.91e-01 | 100.0% | 16.9% |
| None | — | 0.55 | 47.0 | 3.23e-01 | 100.0% | 29.1% | |
| 4929428 | 304.162.1.0 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain | 0.54 | 39.0 | 3.94e-01 | 77.4% | 80.0% |
| 3739985 | 101.1.2.98 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1 | 0.53 | 41.0 | 3.34e-01 | 82.1% | 59.4% |
| 3316686 | 2484.1.1.157 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 | 0.53 | 37.0 | 2.71e-01 | 100.0% | 25.8% |
| 3683044 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.53 | 45.0 | 3.54e-01 | 100.0% | 77.0% |
| 4977871 | 2003.1.1.30 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ApbA | 0.53 | 45.0 | 3.66e-01 | 98.8% | 97.1% |
| 4978118 | 241.1.1.5 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › DUF2299 | 0.52 | 37.0 | 3.12e-01 | 81.0% | 41.3% |
| 5050153 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.52 | 42.0 | 3.39e-01 | 90.5% | 94.1% |
| 4604112 | 213.1.1.8 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › HlyC | 0.51 | 38.0 | 3.15e-01 | 79.8% | 61.3% |
| 3291219 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.51 | 40.0 | 3.39e-01 | 86.9% | 64.7% |
| 4944420 | 324.1.1.0 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like | 0.51 | 39.0 | 3.29e-01 | 83.3% | 62.7% |
| 3743748 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 37.0 | 3.63e-01 | 77.4% | 91.1% |
| 4255094 | 304.28.1.35 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Amnionless | 0.51 | 39.0 | 3.69e-01 | 86.9% | 73.6% |
| 3645698 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 40.0 | 3.21e-01 | 88.1% | 64.4% |
| 1954209 | 2004.1.1.44 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PRK | 0.51 | 38.0 | 2.66e-01 | 82.1% | 94.1% |
| 3335487 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.51 | 43.0 | 3.59e-01 | 100.0% | 95.6% |
| 5062833 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.50 | 41.0 | 3.58e-01 | 95.2% | 92.9% |
| 4169399 | 304.14.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR | 0.50 | 38.0 | 3.92e-01 | 82.1% | 94.9% |
| 3235630 | 209.1.1.14 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › PF29411 | 0.50 | 36.0 | 2.79e-01 | 77.4% | 37.6% |
| 3331003 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.50 | 40.0 | 3.73e-01 | 90.5% | 74.5% |