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IMGVR_UViG_3300011187_001073-3300011187-Ga0136596_10052174

Arc-Vir

IMGVR_UViG_3300011187_001073-3300011187-Ga0136596_10052174

Quality

89.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-92
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1m62A00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.68 36.0 3.77e-01 88.0% 54.0%
4jioA01 1.20.120.560 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › alix/aip1 in complex with the ypdl late domain 0.67 43.0 3.55e-01 87.0% 37.3%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.65 45.0 4.43e-01 71.7% 75.8%
3b77B02 1.10.287.210 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 45.0 4.66e-01 71.7% 93.1%
4f0uA00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.64 56.0 4.74e-01 100.0% 58.7%
2oauA01 1.10.287.1260 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 50.0 4.85e-01 87.0% 76.5%
1cpcA00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.62 54.0 4.59e-01 100.0% 61.1%
2fsfB04 1.10.3060.10 Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA 0.61 46.0 3.59e-01 81.5% 39.6%
4akvA02 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.61 51.0 4.11e-01 94.6% 94.2%
1werA01 1.10.506.10 Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1 0.61 45.0 3.59e-01 98.9% 40.3%
1lvlA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 44.0 3.42e-01 77.2% 37.3%
1m6nA04 1.10.3060.10 Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA 0.60 42.0 3.74e-01 72.8% 52.6%
4nqiD00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.60 52.0 3.98e-01 100.0% 82.3%
3vkgB03 1.20.58.1120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4 0.60 47.0 4.01e-01 85.9% 75.0%
1bgfA00 1.10.532.10 Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain 0.60 42.0 3.83e-01 76.1% 54.8%
2e9xA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 43.0 3.81e-01 75.0% 53.1%
2ficB00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.59 48.0 3.75e-01 88.0% 86.6%
5nl6B01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 42.0 3.89e-01 75.0% 65.3%
6t4hA03 1.10.3060.10 Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA 0.59 45.0 3.71e-01 82.6% 48.3%
4wpcA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.58 49.0 3.53e-01 93.5% 77.7%
4mycA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.58 50.0 3.48e-01 97.8% 87.2%
1kmiZ02 1.10.287.500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.58 41.0 3.58e-01 72.8% 97.0%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.58 42.0 4.15e-01 78.3% 83.3%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.57 39.0 4.15e-01 87.0% 80.5%
4xvxA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.57 45.0 3.89e-01 87.0% 94.6%
2jexA01 1.10.287.30 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1 0.56 40.0 3.99e-01 75.0% 79.2%
2kg7B00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.56 43.0 4.23e-01 82.6% 79.4%
1jmwA00 1.20.120.30 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain 0.56 45.0 3.92e-01 89.1% 56.8%
3na7A00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 41.0 3.00e-01 77.2% 97.0%
6jpaE00 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.55 40.0 3.24e-01 76.1% 50.9%
2v0oB00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.55 47.0 3.47e-01 100.0% 85.2%
2xseA00 1.20.120.1440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › JBP1, DNA-binding domain 0.54 43.0 3.58e-01 84.8% 64.8%
3l8rA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.54 42.0 4.09e-01 81.5% 89.2%
1q8cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.54 43.0 3.86e-01 92.4% 60.6%
1gxyA00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.53 40.0 3.03e-01 80.4% 69.5%
2wyhB04 1.20.1270.50 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain 0.52 36.0 3.56e-01 72.8% 70.3%
3tbiB02 6.10.140.1670 Special › Helix non-globular › Helix Hairpins › 0.51 42.0 4.08e-01 87.0% 91.0%
3nnrA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 44.0 3.45e-01 96.7% 89.1%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3793454 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.72 51.0 4.09e-01 73.9% 94.9%
4680207 1075.1.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane 0.70 54.0 4.04e-01 82.6% 79.6%
4977468 5058.1.1.16 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 0.67 53.0 5.37e-01 83.7% 94.4%
3979628 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.66 51.0 4.26e-01 81.5% 71.0%
3845930 633.23.1.22 alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL 0.64 44.0 3.84e-01 70.7% 47.9%
4996138 5069.1.3.136 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › MS_channel_1st 0.63 50.0 4.46e-01 87.0% 65.2%
4554168 1079.1.1.13 alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Mntp 0.63 44.0 3.58e-01 73.9% 69.1%
3722765 5001.1.1.32 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Solute_trans_a 0.62 49.0 3.57e-01 87.0% 37.8%
3651438 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.62 46.0 4.37e-01 78.3% 67.3%
4940500 5058.1.1.16 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 0.62 51.0 4.81e-01 91.3% 81.7%
4964387 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.62 49.0 4.82e-01 87.0% 85.0%
3297770 622.4.1.26 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › HisKA 0.60 42.0 4.34e-01 71.7% 83.5%
4278712 5058.1.1.16 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 0.59 51.0 4.96e-01 100.0% 100.0%
3511834 1075.1.2.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.59 43.0 3.86e-01 77.2% 54.6%
3787585 5086.1.1.87 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ING 0.58 42.0 4.04e-01 75.0% 96.2%
4304214 192.2.1.18 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ING 0.58 42.0 3.92e-01 75.0% 88.7%
4344623 3758.2.1.1 alpha bundles › Bacterial hemolysins-like › Biopolymer transport protein ExbB › Biopolymer transport protein ExbB › MotA_ExbB 0.58 46.0 3.60e-01 87.0% 51.4%
4238557 1188.1.1.3 alpha bundles › ZIP zinc transporter › ZIP zinc transporter › ZIP zinc transporter › Mntp 0.58 47.0 3.82e-01 89.1% 52.2%
3627220 1075.5.1.5 alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Rft-1 0.58 48.0 3.91e-01 94.6% 65.3%
4116779 603.1.1.174 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › HisKA 0.57 41.0 4.51e-01 75.0% 97.3%
3792061 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.57 45.0 4.38e-01 87.0% 85.4%
5040843 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.56 46.0 4.61e-01 91.3% 92.6%
4441061 5058.1.1.16 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 0.56 50.0 4.97e-01 98.9% 100.0%
3933113 601.1.2.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.56 51.0 3.90e-01 98.9% 67.3%
4670459 547.1.1.1 alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.56 43.0 3.98e-01 80.4% 80.0%
4476621 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.55 40.0 3.99e-01 77.2% 76.8%
4890939 2004.1.1.735 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MT 0.54 43.0 3.51e-01 84.8% 57.2%
3319168 3922.1.1.163 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Not3 0.53 41.0 3.69e-01 82.6% 82.3%
3237900 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.53 39.0 3.26e-01 79.3% 50.6%
4664596 5037.1.1.2 alpha bundles › Bacterial photosystem II reaction centre L and M subunits-like › Bacterial photosystem II reaction centre L and M subunits-like › Bacterial photosystem II reaction centre L and M subunits-like › PsaA_PsaB 0.53 45.0 2.99e-01 92.4% 54.8%
3384661 601.1.2.90 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Not3 0.53 41.0 3.70e-01 83.7% 79.2%
3921243 2004.1.1.433 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.52 41.0 2.46e-01 84.8% 27.4%
4489485 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.52 41.0 3.21e-01 83.7% 83.6%
3610162 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 41.0 2.77e-01 85.9% 50.7%
3821959 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 41.0 3.58e-01 87.0% 67.9%
D2 medium residues 93-177
PDB
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4evfA01 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.66 41.0 4.43e-01 75.3% 74.6%
1m9iA01 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.66 41.0 4.26e-01 77.6% 67.5%
4mdvB03 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.65 41.0 4.01e-01 75.3% 58.2%
4evfA02 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.65 42.0 4.49e-01 76.5% 75.7%
1avcA07 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.62 40.0 4.21e-01 74.1% 73.3%
2ii2A03 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.58 43.0 4.09e-01 77.6% 95.9%
2g5gX02 1.10.8.760 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Haem-binding uptake, Tiki superfamily, ChaN, domain 2 0.51 33.0 3.82e-01 75.3% 96.6%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3906995 176.1.1.1 alpha arrays › Annexin › Annexin › Annexin › Annexin 0.67 42.0 4.42e-01 75.3% 70.7%
3447407 176.1.1.1 alpha arrays › Annexin › Annexin › Annexin › Annexin 0.66 42.0 4.23e-01 76.5% 63.5%
3931795 176.1.1.1 alpha arrays › Annexin › Annexin › Annexin › Annexin 0.66 42.0 4.56e-01 77.6% 78.6%
4455495 176.1.1.1 alpha arrays › Annexin › Annexin › Annexin › Annexin 0.66 42.0 4.49e-01 76.5% 74.7%
4394714 176.1.1.0 alpha arrays › Annexin › Annexin › Annexin 0.64 41.0 4.38e-01 75.3% 74.7%
3470129 176.1.1.1 alpha arrays › Annexin › Annexin › Annexin › Annexin 0.64 41.0 4.20e-01 75.3% 65.9%
3476143 176.1.1.1 alpha arrays › Annexin › Annexin › Annexin › Annexin 0.64 41.0 3.88e-01 77.6% 53.3%
3088235 176.1.1.0 alpha arrays › Annexin › Annexin › Annexin 0.63 39.0 4.12e-01 75.3% 70.7%
3731650 176.1.1.0 alpha arrays › Annexin › Annexin › Annexin 0.62 40.0 4.05e-01 76.5% 64.7%
4111394 176.1.1.0 alpha arrays › Annexin › Annexin › Annexin 0.62 41.0 4.31e-01 76.5% 76.0%
3248106 176.1.1.1 alpha arrays › Annexin › Annexin › Annexin › Annexin 0.58 42.0 4.26e-01 78.8% 76.5%
4309684 176.1.1.1 alpha arrays › Annexin › Annexin › Annexin › Annexin 0.55 39.0 3.83e-01 75.3% 72.6%
3720265 2007.2.3.3 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Syja_N 0.54 46.0 3.22e-01 100.0% 89.8%
3941155 170.1.1.0 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.54 44.0 4.16e-01 92.9% 83.8%
3576468 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 34.0 3.35e-01 75.3% 63.2%