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IMGVR_UViG_3300011189_001051-3300011189-Ga0136558_10055641

Arc-Vir

IMGVR_UViG_3300011189_001051-3300011189-Ga0136558_10055641

Identity

Kingdom:
archaea

Quality

69.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-67
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zm8A00 3.40.570.10 Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A 0.78 66.0 4.14e-01 100.0% 19.2%
5yhoA02 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.62 34.0 2.40e-01 81.8% 17.9%
3kdrA03 3.30.1120.70 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.60 32.0 3.10e-01 88.6% 42.0%
3nuhB02 3.30.300.370 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.59 38.0 2.86e-01 100.0% 24.0%
4h63Q04 3.90.1150.120 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.59 40.0 3.08e-01 77.3% 27.6%
4g1gA02 2.70.20.60 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Viral matrix protein, C-terminal domain 0.57 38.0 2.64e-01 70.5% 45.6%
4khbC00 2.30.29.210 Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p 0.57 48.0 3.70e-01 100.0% 42.5%
2e9xB01 3.40.5.50 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.56 52.0 4.44e-01 100.0% 68.2%
2iewB00 3.30.470.160 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Inositol polyphosphate kinase 0.55 42.0 2.71e-01 90.9% 63.3%
1tqzA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 41.0 3.19e-01 100.0% 74.0%
2ynaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 36.0 3.10e-01 79.5% 65.9%
7bgsA01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.52 43.0 3.22e-01 97.7% 49.6%
5e5nA02 1.10.1240.100 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.52 40.0 3.26e-01 93.2% 73.5%
8f5pE01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 39.0 2.34e-01 93.2% 23.1%
2zu2A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 35.0 2.87e-01 75.0% 56.1%
1iktA00 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.51 41.0 3.16e-01 97.7% 95.7%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4313114 378.1.1.30 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › PF30178 0.87 78.0 5.57e-01 100.0% 38.3%
3839706 378.1.1.30 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › PF30178 0.86 77.0 5.60e-01 100.0% 40.0%
3635140 378.1.1.9 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 0.80 71.0 5.28e-01 100.0% 84.5%
3915497 378.1.2.1 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › Inactive Tox-GHH domain of teneurin › Tox-GHH 0.77 53.0 4.19e-01 86.4% 35.6%
3434619 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.75 67.0 4.90e-01 100.0% 38.9%
3324312 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.75 67.0 4.91e-01 100.0% 40.0%
5051950 2006.1.3.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.65 48.0 3.34e-01 81.8% 23.2%
5004725 302.4.1.0 ↗ a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.62 40.0 3.11e-01 100.0% 27.6%
3413090 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.57 50.0 4.08e-01 100.0% 62.7%
5075901 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.57 53.0 4.88e-01 100.0% 81.8%
4016668 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.56 46.0 3.32e-01 100.0% 35.9%
3173835 377.1.1.46 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › AI2M-like_HNH 0.56 50.0 4.50e-01 97.7% 80.0%
5045837 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.55 50.0 4.49e-01 100.0% 75.0%
4488198 7555.1.1.0 ↗ a/b three-layered sandwiches › Alpha-2,3/8-sialyltransferase CstII-related › Alpha-2,3/8-sialyltransferase CstII-related › Alpha-2,3/8-sialyltransferase CstII-related 0.53 36.0 2.28e-01 72.7% 88.5%
4978753 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.51 41.0 2.59e-01 93.2% 24.7%
3486137 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.51 39.0 2.86e-01 100.0% 37.6%