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IMGVR_UViG_3300011438_000020-3300011438-Ga0137451_100004533

Arc-Vir

IMGVR_UViG_3300011438_000020-3300011438-Ga0137451_100004533

Identity

Kingdom:
archaea

Quality

85.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-72
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qggA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.66 47.0 4.23e-01 75.0% 87.1%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.65 50.0 4.39e-01 83.8% 82.4%
6ijfC01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.64 45.0 4.09e-01 75.0% 64.5%
1e88A03 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.61 36.0 4.22e-01 82.4% 92.9%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.61 43.0 3.94e-01 75.0% 65.9%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.60 46.0 4.75e-01 82.4% 98.4%
4x8iA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.60 44.0 4.16e-01 79.4% 98.8%
1mbmA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 38.0 3.77e-01 80.9% 61.1%
3oqcA02 3.90.70.130 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.59 42.0 3.09e-01 77.9% 52.4%
7syvx01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 43.0 3.51e-01 85.3% 70.8%
1b23P03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 47.0 4.25e-01 100.0% 75.5%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 45.0 4.12e-01 100.0% 72.8%
1xv2C01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.51 41.0 3.61e-01 95.6% 65.8%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.50 41.0 4.03e-01 92.6% 94.6%
1v70A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 42.0 3.72e-01 95.6% 80.0%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3936469 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 49.0 4.50e-01 76.5% 68.9%
3577505 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 48.0 4.48e-01 76.5% 69.4%
5040464 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 46.0 4.21e-01 75.0% 100.0%
5001596 1.1.8.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.63 48.0 4.39e-01 82.4% 71.1%
3399965 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 44.0 4.05e-01 76.5% 75.6%
3408556 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 43.0 3.70e-01 75.0% 52.7%
4518787 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.60 44.0 4.37e-01 80.9% 100.0%
3915471 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.60 35.0 4.14e-01 80.9% 97.5%
4315769 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 45.0 3.89e-01 88.2% 85.5%
3842927 10.32.1.73 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › BetaGal_ABD_1 0.56 40.0 3.17e-01 76.5% 85.5%
1245465 391.1.1.1 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › fn1 0.54 36.0 3.94e-01 82.4% 94.0%
5054339 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.53 37.0 3.71e-01 100.0% 71.4%
3459780 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.53 41.0 3.30e-01 86.8% 100.0%
3837995 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 38.0 4.14e-01 82.4% 98.2%
5014962 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 44.0 3.70e-01 100.0% 70.8%
3881192 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 45.0 3.42e-01 100.0% 58.8%
3604406 219.1.1.76 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.51 38.0 2.99e-01 83.8% 83.5%
4954467 11.1.1.237 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG4 0.51 39.0 3.66e-01 83.8% 84.7%
4979291 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.51 44.0 4.33e-01 98.5% 94.7%
4947721 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 43.0 3.65e-01 100.0% 73.6%
3966451 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.51 44.0 3.97e-01 100.0% 75.8%
1316605 10.32.1.50 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF5077 0.50 44.0 3.61e-01 100.0% 58.0%