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IMGVR_UViG_3300011438_000020-3300011438-Ga0137451_100004546

Arc-Vir

IMGVR_UViG_3300011438_000020-3300011438-Ga0137451_100004546

Identity

Kingdom:
archaea

Quality

94.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 70-183
PDB
Domain cluster: rep: MN018232.1__QDH50655.1__X__00189__D210-318
CATH (59)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qexA03 2.60.40.1680 Mainly Beta › Sandwich › Immunoglobulin-like › 4-oxalocrotonate tautomerase-like 0.80 74.0 7.44e-01 100.0% 97.4%
1lshA01 2.30.230.10 Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A 0.67 51.0 3.86e-01 79.8% 92.8%
2h6oA01 2.60.40.2800 Mainly Beta › Sandwich › Immunoglobulin-like › 0.67 60.0 5.53e-01 100.0% 85.2%
2n59A00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 47.0 4.99e-01 100.0% 83.2%
5j7mA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 39.0 3.84e-01 100.0% 57.4%
3isrA02 2.60.40.2250 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 42.0 4.41e-01 100.0% 76.0%
3lsoA01 2.60.40.2270 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 46.0 4.12e-01 77.2% 95.2%
1yllA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 42.0 4.61e-01 100.0% 83.7%
3es4A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 30.0 3.00e-01 100.0% 41.4%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.63 49.0 3.78e-01 81.6% 87.1%
1g0dA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 47.0 4.86e-01 99.1% 87.3%
2jlpB00 2.60.40.200 Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain 0.60 44.0 3.96e-01 78.1% 95.2%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.60 46.0 3.65e-01 81.6% 87.2%
7altB01 2.60.40.3510 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 45.0 4.02e-01 79.8% 57.0%
2lfuA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.59 46.0 4.46e-01 83.3% 93.0%
3dzmB00 2.40.160.70 Mainly Beta › Beta Barrel › Porin › outer membrane protein from Thermus thermophilus HB27. 0.59 44.0 3.64e-01 78.1% 99.5%
2ichA01 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.59 46.0 3.97e-01 82.5% 95.0%
1hx6B01 2.70.9.30 Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Viral coat protein p3 0.59 53.0 4.20e-01 100.0% 84.1%
6i7sG01 2.30.230.10 Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A 0.58 42.0 3.33e-01 76.3% 90.2%
4bcuA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.58 53.0 4.47e-01 100.0% 86.7%
2w7qB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.58 46.0 3.96e-01 84.2% 84.4%
2wy3B00 2.60.40.1990 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 51.0 4.87e-01 98.2% 83.9%
7alkA01 2.60.40.3510 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 44.0 3.92e-01 79.8% 61.3%
5mw5A01 2.60.40.3510 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 44.0 3.97e-01 79.8% 60.9%
1te5A00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.57 40.0 3.08e-01 99.1% 32.0%
3h7jA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 38.0 3.94e-01 100.0% 70.9%
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 45.0 4.06e-01 85.1% 60.9%
3hrdB01 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.57 43.0 3.79e-01 78.9% 85.4%
1ffvB04 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.56 42.0 3.53e-01 78.9% 70.2%
1af6A00 2.40.170.10 Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type 0.56 43.0 2.90e-01 79.8% 31.8%
3qq2B00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.56 52.0 3.99e-01 100.0% 95.6%
3sybA00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.56 46.0 3.18e-01 90.4% 98.5%
3lwcA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 36.0 3.75e-01 99.1% 71.8%
2o62A02 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 42.0 4.00e-01 81.6% 97.1%
4tw1B00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.55 41.0 3.12e-01 78.1% 90.8%
1h4uA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.55 46.0 3.54e-01 88.6% 51.4%
8ornD01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 41.0 3.60e-01 81.6% 94.3%
1l9nA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 4.23e-01 100.0% 83.3%
5axgA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 41.0 4.05e-01 97.4% 75.4%
4xl1E01 2.60.40.3510 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 40.0 3.64e-01 79.8% 65.2%
4lr4A01 2.60.120.1420 Mainly Beta › Sandwich › Jelly Rolls › 0.53 43.0 3.74e-01 100.0% 56.8%
1fi2A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 39.0 3.22e-01 100.0% 43.3%
3vmnA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 44.0 4.08e-01 98.2% 71.8%
4lejA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 39.0 3.43e-01 100.0% 52.1%
1m1cA00 3.90.1840.10 Alpha Beta › Alpha-Beta Complex › Major capsid protein › Major capsid protein 0.53 43.0 2.69e-01 88.6% 91.4%
6wilA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.53 43.0 3.15e-01 92.1% 99.4%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.52 40.0 3.52e-01 82.5% 93.8%
4ojdH01 2.60.98.60 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Cell-cell fusogen EFF/AFF, domain 1 0.52 45.0 4.02e-01 95.6% 95.1%
2pn5A08 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.52 41.0 4.19e-01 100.0% 87.4%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.52 42.0 3.85e-01 89.5% 85.8%
1y3tA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 34.0 3.04e-01 98.2% 45.9%
4mxtA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 41.0 3.50e-01 86.0% 83.4%
1gbgA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 46.0 3.76e-01 100.0% 96.7%
3hlkA01 2.60.40.2240 Mainly Beta › Sandwich › Immunoglobulin-like › Acyl-CoA thioester hydrolase/BAAT N-terminal domain 0.51 45.0 4.26e-01 99.1% 81.5%
2vvfA02 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.51 46.0 4.48e-01 100.0% 89.8%
2y7lA02 2.60.40.2430 Mainly Beta › Sandwich › Immunoglobulin-like › Agglutinin-like protein, N-terminal domain, N2 subdomain 0.51 45.0 4.14e-01 99.1% 76.8%
3v10A02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 45.0 4.16e-01 100.0% 84.2%
4d8oA03 2.60.40.2660 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 34.0 3.34e-01 75.4% 62.7%
4gf4A00 2.40.160.180 Mainly Beta › Beta Barrel › Porin › Carbohydrate-selective porin OprB 0.50 37.0 2.77e-01 76.3% 49.5%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
441034 3386.1.1.4 ↗ beta sandwiches › gp9 C-terminal domain-like › gp9 C-terminal domain-related › gp9 C-terminal domain-related › T4_gp9_10_C 0.80 74.0 7.28e-01 100.0% 92.5%
2512673 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.76 61.0 5.92e-01 100.0% 77.8%
3609844 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.72 65.0 5.90e-01 99.1% 92.0%
2581320 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.71 66.0 6.41e-01 100.0% 92.8%
2373 5087.2.1.2 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 0.67 52.0 3.87e-01 80.7% 91.4%
3227607 5087.2.1.2 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 0.67 52.0 3.78e-01 80.7% 91.0%
2491354 4182.1.1.3 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C 0.66 42.0 4.54e-01 100.0% 76.0%
3387574 5084.3.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter 0.66 56.0 4.11e-01 93.0% 96.5%
4044625 5087.2.1.2 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 0.65 51.0 3.71e-01 82.5% 90.0%
3888419 5087.2.1.2 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 0.65 51.0 3.80e-01 82.5% 89.8%
4075543 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.63 50.0 3.66e-01 83.3% 98.7%
3974567 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.63 49.0 3.71e-01 81.6% 94.7%
1548777 71.1.1.8 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.63 49.0 3.78e-01 81.6% 87.1%
4038477 5084.3.1.3 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › PF29188 0.62 53.0 3.85e-01 93.0% 95.2%
4937593 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.62 47.0 3.83e-01 80.7% 92.7%
4294796 9.1.1.14 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS 0.59 47.0 4.12e-01 84.2% 99.4%
901 4252.1.1.1 ↗ beta barrels › AttH-like › AttH-like › AttH-like › CrtC 0.59 46.0 3.90e-01 82.5% 89.9%
5014023 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.59 46.0 3.87e-01 81.6% 88.6%
5077191 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 48.0 5.05e-01 100.0% 99.0%
3275875 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 48.0 4.99e-01 100.0% 95.2%
3444541 11.2.1.37 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF6598 0.58 43.0 3.65e-01 79.8% 47.0%
2771050 11.2.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › MNNL 0.57 43.0 3.87e-01 78.1% 61.5%
5015520 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.57 44.0 3.57e-01 80.7% 88.6%
3546952 11.2.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › MNNL 0.57 41.0 3.81e-01 76.3% 65.3%
4498349 71.1.1.2 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.57 45.0 3.87e-01 84.2% 86.1%
3178469 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 52.0 4.77e-01 100.0% 82.8%
4014909 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.55 42.0 3.41e-01 78.9% 48.6%
3995220 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 49.0 4.41e-01 100.0% 77.5%
852 9.1.1.29 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › BFA1_C 0.55 42.0 4.00e-01 81.6% 97.1%
3729649 4252.1.1.3 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DA_C 0.55 41.0 3.38e-01 77.2% 96.2%
4349531 4252.1.1.3 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DA_C 0.55 41.0 3.38e-01 78.9% 50.5%
5000149 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 40.0 3.94e-01 100.0% 70.4%
4465334 4252.1.1.7 ↗ beta barrels › AttH-like › AttH-like › AttH-like › Tocopherol_cycl 0.55 45.0 3.62e-01 89.5% 100.0%
4385484 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 50.0 4.60e-01 100.0% 79.3%
2082911 11.2.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › MNNL 0.54 40.0 3.68e-01 78.9% 67.7%
4382844 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 49.0 4.74e-01 100.0% 90.0%
5032655 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 47.0 3.99e-01 99.1% 71.5%
5073672 4252.1.1.7 ↗ beta barrels › AttH-like › AttH-like › AttH-like › Tocopherol_cycl 0.54 42.0 3.62e-01 84.2% 93.0%
4349091 5084.8.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.54 38.0 2.65e-01 89.5% 20.7%
3507431 11.2.1.7 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › Anillin 0.53 40.0 3.24e-01 78.9% 60.4%
4606000 4252.1.1.3 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DA_C 0.53 40.0 3.25e-01 78.9% 48.4%
5005245 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 47.0 3.78e-01 100.0% 77.0%
2819930 4252.1.1.3 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DA_C 0.53 40.0 3.23e-01 78.9% 48.4%
3849839 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.53 39.0 4.10e-01 76.3% 98.0%
5036963 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 46.0 4.66e-01 100.0% 97.4%
3964096 5084.1.1.4 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity 0.52 47.0 4.09e-01 100.0% 85.1%
3734952 4252.1.1.12 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DUF7064 0.51 46.0 3.93e-01 100.0% 93.0%
4959177 4252.1.1.12 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DUF7064 0.51 40.0 3.52e-01 84.2% 98.3%
4991701 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 45.0 3.73e-01 100.0% 73.0%
D2 medium residues 1-69
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6j7xA01 1.25.40.120 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein prenylyltransferase 0.54 33.0 2.21e-01 72.5% 14.5%
4c0kA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.52 37.0 2.80e-01 78.3% 95.5%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3993667 2004.1.1.16 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.56 42.0 3.00e-01 79.7% 38.5%
4649150 63.1.1.0 ↗ beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain 0.52 38.0 2.95e-01 78.3% 54.8%
3990632 2498.5.1.0 ↗ mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like 0.50 36.0 3.22e-01 78.3% 76.2%