←Back to structures
IMGVR_UViG_3300011965_000002-3300011965-Ga0119875_10010820
Arc-VirIMGVR_UViG_3300011965_000002-3300011965-Ga0119875_10010820
Identity
- Kingdom:
- archaea
Quality
85.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-75
Domain cluster:
rep: IMGVR_UViG_2788499920_000001-2788499920-2788989484__D19-83
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04434.23 best | SWIM | 23.2 | 5.40e-05 | 56.2% | 92.1% |
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5kvsA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.64 | 46.0 | 3.56e-01 | 75.3% | 46.9% |
| 5upiA01 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.63 | 46.0 | 3.48e-01 | 79.5% | 63.8% |
| 2kd2A01 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.62 | 46.0 | 4.44e-01 | 79.5% | 82.1% |
| 3hkmB00 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.61 | 49.0 | 3.61e-01 | 91.8% | 94.8% |
| 3c4sA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 35.0 | 3.86e-01 | 100.0% | 70.2% |
| 1oypA01 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.60 | 48.0 | 3.58e-01 | 91.8% | 97.2% |
| 2nn6E00 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.60 | 48.0 | 3.37e-01 | 91.8% | 86.9% |
| 2ba1D01 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.59 | 49.0 | 3.53e-01 | 95.9% | 93.9% |
| 5jeaD00 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.57 | 48.0 | 3.49e-01 | 95.9% | 96.9% |
| 2nn6D00 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.57 | 47.0 | 3.52e-01 | 95.9% | 95.1% |
| 3i1aA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 45.0 | 4.01e-01 | 86.3% | 79.6% |
| 3o4hA01 | 2.130.10.150 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Peptidase/esterase 'gauge' domain | 0.54 | 44.0 | 2.95e-01 | 91.8% | 91.3% |
| 4bubA02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.53 | 39.0 | 2.81e-01 | 79.5% | 53.9% |
| 3cwxA00 | 3.40.1420.20 | Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Pathogenicity island component CagD | 0.53 | 42.0 | 3.57e-01 | 87.7% | 60.0% |
| 4r7rA00 | 3.30.1490.410 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 | 0.53 | 47.0 | 3.98e-01 | 100.0% | 87.7% |
| 2ffsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 44.0 | 3.55e-01 | 93.2% | 74.5% |
| 2hezA00 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.52 | 44.0 | 3.01e-01 | 100.0% | 95.2% |
| 3jr1A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 41.0 | 3.74e-01 | 86.3% | 82.8% |
| 3dxpA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 42.0 | 3.91e-01 | 87.7% | 87.1% |
| 3f5rA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 38.0 | 3.31e-01 | 78.1% | 92.9% |
| 2kc5A01 | 3.30.1460.40 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › [NiFe]-hydrogenase assembly chaperone, HybE | 0.52 | 42.0 | 3.40e-01 | 87.7% | 63.2% |
| 2l89A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 34.0 | 2.99e-01 | 98.6% | 45.4% |
| 3d7tA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 43.0 | 4.20e-01 | 97.3% | 90.1% |
| 2dx0B01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.51 | 38.0 | 3.86e-01 | 90.4% | 78.7% |
| 5vxzA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 40.0 | 2.93e-01 | 86.3% | 57.0% |
| 1mdaH00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.50 | 43.0 | 2.72e-01 | 94.5% | 92.1% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4928595 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.66 | 48.0 | 4.36e-01 | 95.9% | 55.2% |
| 3168452 | 331.10.2.3 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › Med1 | 0.64 | 49.0 | 4.40e-01 | 83.6% | 83.8% |
| 3578232 | 77.3.1.4 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF28998 | 0.63 | 50.0 | 3.56e-01 | 87.7% | 64.4% |
| 3259661 | 331.23.1.9 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › RnlA_toxin | 0.61 | 48.0 | 4.88e-01 | 91.8% | 87.1% |
| 4122018 | 4099.1.1.10 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 | 0.61 | 48.0 | 4.41e-01 | 87.7% | 94.0% |
| 3689881 | 212.1.1.10 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › RNase_PH | 0.60 | 48.0 | 3.83e-01 | 90.4% | 83.9% |
| 3217961 | 212.1.1.10 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › RNase_PH | 0.60 | 47.0 | 4.10e-01 | 89.0% | 95.0% |
| 3591512 | 212.1.1.10 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › RNase_PH | 0.59 | 47.0 | 3.79e-01 | 89.0% | 89.3% |
| 4947013 | 212.1.1.10 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › RNase_PH | 0.59 | 47.0 | 3.82e-01 | 91.8% | 80.6% |
| 3867996 | 212.1.1.10 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › RNase_PH | 0.58 | 47.0 | 3.62e-01 | 91.8% | 80.6% |
| 3481245 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.58 | 47.0 | 3.83e-01 | 93.2% | 84.7% |
| 3639933 | 212.1.1.10 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › RNase_PH | 0.57 | 48.0 | 3.39e-01 | 95.9% | 77.8% |
| 3995018 | 212.1.1.10 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › RNase_PH | 0.57 | 47.0 | 3.78e-01 | 95.9% | 83.1% |
| 3606750 | 212.1.1.10 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › RNase_PH | 0.57 | 47.0 | 3.75e-01 | 93.2% | 82.6% |
| 3677388 | 212.1.1.10 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › RNase_PH | 0.56 | 47.0 | 3.72e-01 | 95.9% | 87.3% |
| 3416385 | 3257.1.1.1 ↗ | a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N | 0.56 | 41.0 | 3.03e-01 | 78.1% | 70.3% |
| 5078886 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.54 | 47.0 | 4.12e-01 | 95.9% | 80.0% |
| 3876017 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.54 | 45.0 | 2.85e-01 | 91.8% | 18.3% |
| 3839277 | 241.16.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › protein CagD › protein CagD › CagD | 0.54 | 41.0 | 3.35e-01 | 83.6% | 53.1% |
| 5014255 | 220.1.1.87 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 | 0.54 | 41.0 | 3.43e-01 | 83.6% | 74.8% |
| 4018988 | 3794.1.1.0 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit | 0.54 | 40.0 | 3.26e-01 | 79.5% | 89.3% |
| 3220278 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 44.0 | 2.85e-01 | 91.8% | 20.3% |
| 3495663 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.53 | 44.0 | 2.81e-01 | 91.8% | 18.3% |
| 3276159 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.51 | 40.0 | 2.70e-01 | 86.3% | 24.1% |
| 3700082 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.51 | 40.0 | 2.53e-01 | 86.3% | 22.4% |
| 3344083 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.51 | 40.0 | 2.78e-01 | 86.3% | 36.4% |
| 3228083 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.51 | 41.0 | 2.87e-01 | 90.4% | 34.2% |
| 4995431 | 5.1.4.14 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N | 0.51 | 45.0 | 2.83e-01 | 97.3% | 87.3% |
| 3473901 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.51 | 43.0 | 2.82e-01 | 98.6% | 21.2% |
| 4496871 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.50 | 38.0 | 2.62e-01 | 86.3% | 25.9% |