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IMGVR_UViG_3300011979_000236-3300011979-Ga0120379_100051459

Arc-Vir

IMGVR_UViG_3300011979_000236-3300011979-Ga0120379_100051459

Identity

Kingdom:
archaea

Quality

82.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-61
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3m05B01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 46.0 3.91e-01 80.4% 96.7%
6em3x01 3.40.50.10480 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain 0.62 50.0 3.54e-01 96.1% 36.8%
1g71A01 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.62 49.0 3.36e-01 100.0% 63.6%
4aogA00 3.20.120.10 Alpha Beta › Alpha-Beta Barrel › hfbii hydrophobin › Hydrophobin 0.60 49.0 4.38e-01 100.0% 71.2%
3aqoA01 3.30.70.3400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 41.0 3.68e-01 78.4% 100.0%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 46.0 4.14e-01 100.0% 94.9%
5h80B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 43.0 2.80e-01 84.3% 71.3%
3kfvA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 45.0 3.79e-01 98.0% 97.0%
2bkfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 45.0 4.02e-01 100.0% 65.1%
2qsdB02 3.50.100.10 Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain 0.55 40.0 3.65e-01 90.2% 55.1%
2zyrA02 2.60.40.2190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 45.0 3.83e-01 100.0% 55.3%
3jr7A02 2.20.28.50 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain 0.54 36.0 3.99e-01 80.4% 94.7%
1zxeC02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.54 37.0 2.66e-01 72.5% 80.7%
1wu2A04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.54 44.0 3.99e-01 100.0% 64.9%
4trtA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.53 36.0 2.82e-01 70.6% 85.7%
4gs5A01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.53 40.0 2.70e-01 90.2% 49.2%
6efyA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.65e-01 100.0% 60.2%
3nyiB01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 38.0 2.89e-01 86.3% 95.5%
3t7aA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 41.0 2.82e-01 92.2% 95.5%
3jyuB01 3.30.2230.10 Alpha Beta › 2-Layer Sandwich › DUSP-like › DUSP-like 0.52 40.0 3.25e-01 96.1% 81.1%
3h8hA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 44.0 3.71e-01 100.0% 95.7%
4lizA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.52 40.0 3.18e-01 100.0% 66.7%
2pjhA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 42.0 3.84e-01 100.0% 96.1%
4gioA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 35.0 3.03e-01 78.4% 51.0%
2xgvA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.50 40.0 3.05e-01 92.2% 71.4%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3326268 103.1.1.128 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › Sin3a_C 0.62 50.0 3.33e-01 100.0% 60.4%
4952123 3986.2.1.0 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.61 52.0 4.99e-01 100.0% 91.7%
4999869 205.1.1.1 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4 0.59 48.0 4.31e-01 100.0% 100.0%
4463006 3115.2.1.0 ↗ a+b two layers › GP2-like › GP2 › GP2 0.59 41.0 4.27e-01 76.5% 93.3%
3324359 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.59 46.0 4.44e-01 92.2% 75.0%
5050960 206.1.3.16 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Ins134_P3_kin 0.58 45.0 3.18e-01 96.1% 60.0%
3927505 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.58 46.0 4.18e-01 100.0% 96.2%
3916901 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.57 47.0 4.05e-01 100.0% 87.8%
4113500 1056.1.1.1 ↗ a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD 0.57 46.0 3.20e-01 100.0% 41.9%
5046855 206.1.3.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.57 43.0 3.09e-01 94.1% 61.1%
2817686 1173.1.1.1 ↗ beta barrels › UL128 C-terminal domain › UL128 C-terminal domain › UL128 C-terminal domain › UL128 0.56 32.0 3.24e-01 74.5% 51.0%
3627479 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.56 45.0 3.59e-01 100.0% 63.2%
3555970 12.5.1.1 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5 0.56 41.0 2.93e-01 82.4% 82.9%
3637466 2004.1.1.294 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ELP6 0.55 42.0 2.69e-01 90.2% 36.4%
3793671 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.55 45.0 3.95e-01 100.0% 92.9%
3482731 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.55 38.0 2.98e-01 76.5% 65.9%
4964967 102.2.1.3 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.54 36.0 2.60e-01 76.5% 25.0%
3475783 822.2.1.1 ↗ a+b two layers › GYF/BRK domain-like › BRK domain-like › BRK domain-like › BRK 0.54 35.0 3.71e-01 72.5% 100.0%
1789279 206.1.3.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.54 43.0 3.15e-01 96.1% 62.6%
3695564 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.54 39.0 3.14e-01 82.4% 75.7%
3887305 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 40.0 4.02e-01 100.0% 85.5%
3516766 209.1.1.0 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.52 41.0 3.13e-01 92.2% 91.7%
3813686 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 40.0 2.71e-01 96.1% 37.0%
3424732 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.51 37.0 3.30e-01 80.4% 100.0%
3739571 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.51 38.0 3.58e-01 88.2% 77.1%
3733947 210.1.1.2 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome,Proteasome_A_N 0.51 41.0 2.61e-01 92.2% 81.4%