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IMGVR_UViG_3300012025_000004-3300012025-Ga0136571_10086514
Arc-VirIMGVR_UViG_3300012025_000004-3300012025-Ga0136571_10086514
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-105
Domain cluster:
rep: IMGVR_UViG_3300012028_000005-3300012028-Ga0136584_10007041__D8-105
D2
high
residues 114-201
Domain cluster:
rep: NC_049498.1__YP_009887297.1__HYQ28_gp31__00031__D90-184
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04865.20 best | Baseplate_J | 49.3 | 7.60e-13 | 95.5% | 85.0% |
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6tdyD01 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.73 | 52.0 | 5.55e-01 | 88.6% | 86.7% |
| 1vloA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.67 | 53.0 | 5.25e-01 | 100.0% | 81.3% |
| 2dpyA00 | 3.40.50.12240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.66 | 45.0 | 2.89e-01 | 86.4% | 14.7% |
| 2gk6A02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.63 | 46.0 | 4.70e-01 | 87.5% | 81.9% |
| 1b23P03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.61 | 53.0 | 5.26e-01 | 100.0% | 92.6% |
| 2bhgA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.61 | 47.0 | 4.47e-01 | 90.9% | 71.6% |
| 3fppA01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.60 | 48.0 | 4.63e-01 | 89.8% | 77.9% |
| 5dmyA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 51.0 | 4.61e-01 | 98.9% | 75.2% |
| 4nreA01 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.56 | 48.0 | 4.38e-01 | 98.9% | 99.2% |
| 4e6fA00 | 3.30.530.80 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › | 0.55 | 45.0 | 3.74e-01 | 93.2% | 88.3% |
| 1ca1A02 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.55 | 47.0 | 4.32e-01 | 100.0% | 96.7% |
| 4lplA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 46.0 | 3.98e-01 | 96.6% | 58.5% |
| 2j1aA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 44.0 | 3.88e-01 | 96.6% | 57.4% |
| 4ypjA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 46.0 | 4.28e-01 | 98.9% | 74.8% |
| 7cfdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 31.0 | 3.42e-01 | 70.5% | 71.2% |
| 6y43A01 | 3.90.215.10 | Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 | 0.52 | 39.0 | 3.36e-01 | 80.7% | 61.9% |
| 4eo0A00 | 3.30.110.160 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › | 0.51 | 35.0 | 3.33e-01 | 70.5% | 90.6% |
| 2dd7A00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.51 | 43.0 | 3.42e-01 | 100.0% | 88.8% |
| 1uisA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.51 | 43.0 | 3.35e-01 | 100.0% | 85.7% |
| 8owfA01 | 2.60.40.290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 43.0 | 4.04e-01 | 97.7% | 81.1% |
| 2eqjA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 32.0 | 3.58e-01 | 75.0% | 86.4% |
| 3e9tB00 | 2.60.40.2030 | Mainly Beta › Sandwich › Immunoglobulin-like › CalX-beta domain | 0.50 | 43.0 | 4.03e-01 | 100.0% | 78.8% |
| 2dpkA01 | 2.60.40.2030 | Mainly Beta › Sandwich › Immunoglobulin-like › CalX-beta domain | 0.50 | 43.0 | 3.95e-01 | 100.0% | 80.0% |
| 3fq4B01 | 2.60.40.2030 | Mainly Beta › Sandwich › Immunoglobulin-like › CalX-beta domain | 0.50 | 43.0 | 3.99e-01 | 100.0% | 79.3% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4957576 | 1.1.8.21 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Baseplate_J | 0.88 | 83.0 | 8.06e-01 | 98.9% | 90.5% |
| 3977754 | 1.1.8.21 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Baseplate_J | 0.87 | 80.0 | 7.81e-01 | 100.0% | 89.5% |
| 3948566 | 1.16.1.4 ↗ | beta barrels › cradle loop barrel › Baseplate wedge protein gp6 domain I › Baseplate wedge protein gp6 domain I › T6SS_TssF | 0.79 | 69.0 | 6.85e-01 | 100.0% | 90.0% |
| 1562394 | 1.1.8.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GlxA | 0.76 | 70.0 | 6.49e-01 | 100.0% | 93.5% |
| 159 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.67 | 53.0 | 5.27e-01 | 100.0% | 82.2% |
| 4952364 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.67 | 52.0 | 5.36e-01 | 85.2% | 87.1% |
| 5037173 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.66 | 53.0 | 5.15e-01 | 86.4% | 78.9% |
| 3702149 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.66 | 53.0 | 4.36e-01 | 87.5% | 61.3% |
| 3219717 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.65 | 55.0 | 5.52e-01 | 100.0% | 92.2% |
| 4072524 | 1.1.7.88 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 | 0.64 | 52.0 | 4.82e-01 | 87.5% | 70.9% |
| 3256764 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.64 | 51.0 | 4.56e-01 | 88.6% | 70.0% |
| 3566270 | 1.1.8.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C | 0.64 | 54.0 | 5.36e-01 | 100.0% | 91.1% |
| 5075927 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.63 | 53.0 | 5.38e-01 | 100.0% | 93.2% |
| 4514948 | 1.1.8.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_SelB | 0.63 | 52.0 | 5.10e-01 | 100.0% | 83.2% |
| 3407712 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.63 | 53.0 | 5.17e-01 | 100.0% | 83.7% |
| 5046884 | 1.1.8.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 | 0.63 | 53.0 | 5.35e-01 | 100.0% | 92.1% |
| 5054836 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 51.0 | 4.73e-01 | 90.9% | 84.3% |
| 3195396 | 11.1.1.911 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28381 | 0.62 | 55.0 | 4.70e-01 | 100.0% | 64.8% |
| 3970513 | 1.1.7.87 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 | 0.62 | 49.0 | 4.99e-01 | 87.5% | 89.4% |
| 3966451 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.61 | 52.0 | 5.08e-01 | 100.0% | 87.4% |
| 3267872 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.61 | 48.0 | 4.26e-01 | 88.6% | 58.5% |
| 3504502 | 1.1.8.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 | 0.61 | 52.0 | 4.78e-01 | 100.0% | 73.7% |
| 4129006 | 1.1.8.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 | 0.61 | 54.0 | 5.29e-01 | 100.0% | 91.6% |
| 5083379 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.61 | 54.0 | 5.39e-01 | 100.0% | 97.8% |
| 3567573 | 10.10.1.0 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) | 0.60 | 52.0 | 4.78e-01 | 100.0% | 96.7% |
| 4268152 | 10.10.1.0 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) | 0.60 | 52.0 | 4.78e-01 | 100.0% | 73.3% |
| 4136251 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.60 | 48.0 | 4.60e-01 | 89.8% | 75.2% |
| 3542011 | 10.10.1.0 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) | 0.60 | 52.0 | 4.75e-01 | 100.0% | 74.2% |
| 4966529 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.59 | 46.0 | 4.54e-01 | 87.5% | 78.9% |
| 3309470 | 11.1.1.51 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 | 0.59 | 50.0 | 4.33e-01 | 97.7% | 84.1% |
| 3859218 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.57 | 49.0 | 4.52e-01 | 98.9% | 100.0% |
| 3266016 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.56 | 49.0 | 4.93e-01 | 100.0% | 98.9% |
| 4503008 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.55 | 47.0 | 3.75e-01 | 100.0% | 54.5% |
| 4535773 | 11.1.4.126 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Cna_B, SpaA | 0.54 | 46.0 | 3.68e-01 | 100.0% | 47.7% |
| 4126423 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.54 | 46.0 | 3.59e-01 | 100.0% | 51.6% |
| 4929764 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 46.0 | 4.10e-01 | 100.0% | 71.1% |
| 4340352 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 42.0 | 3.91e-01 | 100.0% | 67.8% |
| 5041635 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 44.0 | 4.05e-01 | 100.0% | 81.6% |
| 3900933 | 11.1.1.54 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_21 | 0.51 | 43.0 | 3.85e-01 | 100.0% | 64.3% |
| 3174476 | 11.1.5.37 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › muHD | 0.51 | 39.0 | 3.60e-01 | 84.1% | 76.7% |
| 3939955 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 44.0 | 4.08e-01 | 100.0% | 87.0% |
| 3388982 | 7.1.1.1 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ | 0.51 | 35.0 | 3.28e-01 | 72.7% | 87.8% |
| 3484606 | 4.1.1.51 ↗ | beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor | 0.51 | 37.0 | 3.81e-01 | 78.4% | 84.7% |
| 3621989 | 11.1.1.50 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Calx-beta | 0.50 | 43.0 | 3.73e-01 | 100.0% | 62.8% |
| 1934779 | 9.22.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Putative lipid binding protein BT_2261 › Putative lipid binding protein BT_2261 › Lipid_bd | 0.50 | 36.0 | 3.12e-01 | 77.3% | 88.4% |
| 3499053 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.50 | 36.0 | 3.17e-01 | 76.1% | 93.3% |