Back to structures

IMGVR_UViG_3300012116_000060-3300012116-Ga0136581_10019754

Arc-Vir

IMGVR_UViG_3300012116_000060-3300012116-Ga0136581_10019754

Quality

85.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-95
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wgmA01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.67 55.0 5.32e-01 100.0% 80.5%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.66 51.0 4.78e-01 87.7% 67.4%
2xubA05 6.10.140.1450 Special › Helix non-globular › Helix Hairpins › 0.66 55.0 5.10e-01 94.5% 78.1%
2dq0A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.63 50.0 4.46e-01 87.7% 97.2%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.62 50.0 4.19e-01 91.8% 57.1%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.61 42.0 4.14e-01 75.3% 67.5%
4modA00 1.20.5.300 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.61 44.0 4.38e-01 78.1% 73.7%
4jgsD00 1.10.287.210 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 44.0 4.20e-01 79.5% 72.9%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.59 46.0 4.79e-01 89.0% 100.0%
2oduA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 43.0 3.93e-01 83.6% 56.2%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 43.0 4.20e-01 79.5% 93.8%
1wncB00 1.20.5.300 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.58 40.0 3.96e-01 83.6% 66.7%
3fayA00 1.10.506.10 Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1 0.58 48.0 3.16e-01 100.0% 39.3%
1kyoF00 1.10.287.20 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain 0.58 47.0 4.70e-01 91.8% 93.2%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.57 39.0 3.74e-01 74.0% 61.2%
1y1uA01 1.20.1050.20 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › STAT transcription factor, all-alpha domain 0.56 48.0 3.58e-01 94.5% 35.4%
1wpaA01 6.10.140.340 Special › Helix non-globular › Helix Hairpins › 0.56 49.0 4.49e-01 100.0% 74.7%
8b6jF01 1.10.287.20 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain 0.56 41.0 4.29e-01 98.6% 89.6%
5pg1A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.56 44.0 3.89e-01 89.0% 94.8%
2v4jA01 6.10.140.1420 Special › Helix non-globular › Helix Hairpins › 0.55 39.0 4.11e-01 79.5% 87.3%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 45.0 4.00e-01 89.0% 69.8%
5ha6B00 1.10.287.210 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 40.0 3.95e-01 83.6% 73.4%
7e6gA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.55 46.0 3.66e-01 93.2% 49.0%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.55 40.0 3.77e-01 79.5% 63.3%
1e91A00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.54 36.0 3.54e-01 82.2% 61.2%
2ktmA00 1.10.790.10 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain 0.53 34.0 3.57e-01 98.6% 72.1%
4cgkA01 6.10.250.3150 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.53 43.0 3.19e-01 94.5% 38.3%
3kbbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 42.0 4.31e-01 86.3% 100.0%
1bccH00 1.10.287.20 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain 0.52 40.0 4.11e-01 91.8% 97.0%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3528691 601.19.1.20 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Fy-3 0.68 59.0 5.05e-01 100.0% 68.0%
3240456 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.68 49.0 4.70e-01 79.5% 65.9%
3858695 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.68 52.0 4.98e-01 91.8% 70.6%
3766742 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.63 45.0 3.91e-01 78.1% 47.8%
3946052 3745.1.1.1 alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex 0.61 48.0 3.14e-01 89.0% 60.0%
5066959 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.61 45.0 3.23e-01 79.5% 47.4%
4842499 1128.1.1.1 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.61 45.0 3.98e-01 84.9% 53.2%
3598120 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.60 44.0 3.83e-01 79.5% 70.8%
4029359 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.60 43.0 3.69e-01 79.5% 48.8%
4003837 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.57 44.0 3.99e-01 83.6% 67.0%
3167298 3711.1.1.0 alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein 0.57 48.0 4.36e-01 100.0% 85.7%
3663497 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.56 46.0 3.72e-01 94.5% 86.5%
4016292 192.2.1.18 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ING 0.55 44.0 3.57e-01 94.5% 46.7%
5012473 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.54 46.0 4.03e-01 94.5% 90.9%
3437243 632.15.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.54 44.0 3.78e-01 97.3% 57.8%
3702706 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.54 44.0 4.33e-01 89.0% 81.2%
4505595 605.6.1.0 alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like 0.54 47.0 4.23e-01 97.3% 93.0%
4589685 632.7.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.53 45.0 4.15e-01 97.3% 71.6%
5041482 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.52 43.0 3.94e-01 100.0% 68.4%
3182561 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.52 43.0 3.50e-01 100.0% 70.3%
3725592 192.8.1.35 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › DUF6594 0.51 44.0 4.08e-01 94.5% 81.1%
4543685 225.1.1.17 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c+His_kinase 0.50 36.0 2.68e-01 76.7% 82.3%
D2 high residues 101-173
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4b1bA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.68 60.0 3.67e-01 98.6% 16.7%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.66 42.0 4.78e-01 100.0% 84.2%
2bk9A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.65 53.0 4.16e-01 89.0% 44.4%
1urvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.65 54.0 4.19e-01 90.4% 42.9%
1ithA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.64 51.0 4.16e-01 100.0% 45.4%
3f8tA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 50.0 3.31e-01 83.6% 90.0%
1f5oA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.64 52.0 4.11e-01 100.0% 43.6%
1rxqD00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.63 46.0 3.52e-01 87.7% 33.1%
3ic9A02 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.63 53.0 5.46e-01 97.3% 98.6%
1x3kA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.62 50.0 3.98e-01 100.0% 43.5%
1oj6A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.62 51.0 4.07e-01 100.0% 44.9%
5ojcA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.60 49.0 3.88e-01 95.9% 42.9%
1is8A01 1.10.286.10 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain 0.60 42.0 4.48e-01 86.3% 90.0%
1mhyG01 1.20.1280.10 Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 1 0.59 34.0 3.56e-01 87.7% 61.8%
1a00B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 48.0 3.83e-01 100.0% 44.5%
6xpdA01 1.20.1510.10 Mainly Alpha › Up-down Bundle › Alpha-lytic protease prodomain-like › Cation efflux protein transmembrane domain 0.58 45.0 3.32e-01 84.9% 56.4%
1x9fD00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 45.0 3.62e-01 100.0% 43.6%
2pmrA00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.57 39.0 3.92e-01 80.8% 68.4%
1ca1A01 1.10.575.10 Mainly Alpha › Orthogonal Bundle › P1 Nuclease › P1 Nuclease 0.57 47.0 3.37e-01 97.3% 81.2%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 42.0 4.06e-01 86.3% 70.4%
3jc6D01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 40.0 3.11e-01 75.3% 42.0%
2owaA01 1.10.220.150 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Arf GTPase activating protein 0.55 39.0 3.37e-01 76.7% 71.7%
1hciA04 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 42.0 3.58e-01 82.2% 59.6%
1bgwA03 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.54 43.0 3.74e-01 86.3% 99.1%
3ibpA01 1.20.58.850 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 37.0 3.81e-01 72.6% 86.1%
3o8oA03 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 47.0 3.40e-01 98.6% 73.5%
1oo0A00 3.30.1560.10 Alpha Beta › 2-Layer Sandwich › Mago nashi protein › Mago nashi 0.51 44.0 3.42e-01 91.8% 91.0%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3936675 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.70 57.0 4.35e-01 87.7% 40.6%
3507546 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.70 45.0 2.93e-01 78.1% 16.0%
4020856 650.1.1.0 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.68 54.0 4.48e-01 87.7% 48.9%
3788414 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.66 58.0 5.36e-01 100.0% 76.7%
157489 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.65 53.0 4.16e-01 89.0% 44.4%
51124 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.63 51.0 4.07e-01 100.0% 43.6%
50988 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.62 50.0 4.02e-01 98.6% 44.5%
3711734 3755.3.1.297 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF9 0.62 51.0 3.87e-01 89.0% 84.2%
4373967 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.61 49.0 3.98e-01 98.6% 46.4%
3179043 212.1.1.3 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.60 43.0 3.79e-01 78.1% 51.4%
4441061 5058.1.1.16 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 0.60 44.0 4.05e-01 78.1% 77.9%
137999 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.60 48.0 3.82e-01 89.0% 42.8%
5074065 632.11.1.18 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › DUF5658 0.59 43.0 3.91e-01 76.7% 86.7%
3233848 193.1.1.18 alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › DUF2465 0.58 53.0 4.91e-01 98.6% 96.7%
4092193 3755.4.1.53 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › CemA 0.58 49.0 4.00e-01 100.0% 49.0%
3233494 637.1.1.0 alpha arrays › Ribosomal protein L19 (L19e) N-terminal domain › Ribosomal protein L19 (L19e) N-terminal domain › Ribosomal protein L19 (L19e) N-terminal domain 0.58 47.0 4.54e-01 100.0% 78.8%
4217669 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.57 46.0 3.27e-01 95.9% 27.6%
3858549 109.46.1.6 alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) › CTLH_Armc9 0.56 50.0 3.96e-01 100.0% 89.3%
4943884 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 50.0 3.93e-01 100.0% 89.3%
3472572 109.46.1.6 alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) › CTLH_Armc9 0.55 47.0 3.82e-01 94.5% 75.0%
3599499 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.55 49.0 3.82e-01 97.3% 88.7%
4870601 3016.1.1.5 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › SHMT 0.54 42.0 3.75e-01 80.8% 63.0%
3489794 174.1.1.1 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin 0.53 43.0 3.39e-01 86.3% 88.7%
5044431 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 44.0 3.58e-01 95.9% 90.3%
4234530 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.52 41.0 3.49e-01 83.6% 55.7%
3754639 150.5.1.106 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › LIN9_C 0.51 39.0 3.76e-01 82.2% 71.8%
3840952 601.19.1.39 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › LIN9_C 0.51 40.0 3.98e-01 84.9% 81.3%
2857735 5057.1.1.1 alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb 0.50 38.0 3.49e-01 80.8% 60.8%