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IMGVR_UViG_3300012170_000276-3300012170-Ga0136598_10033148

Arc-Vir

IMGVR_UViG_3300012170_000276-3300012170-Ga0136598_10033148

Identity

Kingdom:
archaea

Quality

94.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-69
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6hhuA01 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 41.0 3.85e-01 100.0% 53.8%
6zlvA01 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.60 44.0 4.06e-01 96.6% 61.0%
2dpmA02 1.10.1020.10 Mainly Alpha › Orthogonal Bundle › Adenine-specific Methyltransferase; domain 2 › Adenine-specific Methyltransferase, Domain 2 0.58 44.0 3.80e-01 88.1% 81.6%
1x31A02 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.58 47.0 2.98e-01 98.3% 43.2%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 39.0 3.57e-01 100.0% 53.0%
1wg1A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.54 34.0 3.24e-01 100.0% 50.7%
3dsbA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 34.0 2.90e-01 86.4% 38.6%
2f4mA02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.53 33.0 3.45e-01 88.1% 72.0%
1jqpA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 41.0 2.95e-01 96.6% 68.4%
3ttgA00 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.52 46.0 2.86e-01 100.0% 90.5%
1ojqA00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.52 44.0 3.08e-01 100.0% 45.3%
3fn2A00 3.30.2200.10 Alpha Beta › 2-Layer Sandwich › histidine kinase doma clostridium symbiosum atcc 14940 › histidine kinase doma clostridium symbiosum atcc 14940 0.51 32.0 2.69e-01 94.9% 38.1%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4025330 1.1.8.3 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.81 54.0 4.74e-01 94.9% 48.2%
3474805 1.1.8.18 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › POP1_C 0.79 52.0 3.80e-01 94.9% 28.0%
3789121 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.79 55.0 4.01e-01 94.9% 28.9%
4011585 1.1.8.18 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › POP1_C 0.78 56.0 3.99e-01 94.9% 28.4%
4078993 1.1.8.3 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.77 55.0 4.71e-01 94.9% 48.9%
4567015 1.1.8.3 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.73 48.0 4.35e-01 96.6% 50.6%
5004197 1.1.16.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain 0.70 60.0 5.01e-01 100.0% 56.0%
2527304 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.69 44.0 4.39e-01 88.1% 63.9%
3748998 1.1.8.18 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › POP1_C 0.66 51.0 3.57e-01 94.9% 28.1%
3515518 1.1.8.18 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › POP1_C 0.65 52.0 4.04e-01 94.9% 40.8%
3739289 1.1.8.18 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › POP1_C 0.64 55.0 3.96e-01 96.6% 40.0%
3236827 1.1.8.18 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › POP1_C 0.63 52.0 4.01e-01 94.9% 42.4%
3946849 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.62 43.0 4.56e-01 94.9% 86.0%
3993329 1.1.8.18 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › POP1_C 0.60 53.0 3.58e-01 94.9% 30.0%
3183994 3385.1.1.2 ↗ beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 › PF27986 0.56 35.0 3.19e-01 98.3% 44.0%
3327738 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 33.0 2.29e-01 89.8% 17.0%
4475204 304.102.1.3 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.55 47.0 3.15e-01 100.0% 23.8%
4229762 3504.2.1.1 ↗ beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco 0.53 46.0 3.45e-01 100.0% 41.9%
3514380 219.1.1.110 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 0.53 41.0 2.79e-01 98.3% 84.3%
3274193 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 32.0 1.80e-01 88.1% 4.2%
4059449 219.1.1.110 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 0.52 41.0 2.84e-01 96.6% 99.2%
3600338 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 39.0 3.64e-01 98.3% 66.3%
3923769 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.51 44.0 4.02e-01 98.3% 87.5%
3454284 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.50 44.0 2.84e-01 100.0% 21.9%