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IMGVR_UViG_3300012206_000018-3300012206-Ga0137380_1000220822
Arc-VirIMGVR_UViG_3300012206_000018-3300012206-Ga0137380_1000220822
Identity
- Kingdom:
- archaea
Quality
81.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 24-73
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1b01A00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.95 | 67.0 | 7.21e-01 | 74.0% | 86.0% |
| 6az6A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 52.0 | 4.49e-01 | 76.0% | 66.7% |
| 2rhcA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.70 | 45.0 | 2.87e-01 | 72.0% | 12.8% |
| 5idyA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.69 | 50.0 | 3.14e-01 | 78.0% | 27.5% |
| 2di3A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 48.0 | 4.12e-01 | 78.0% | 62.7% |
| 4h15A00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.62 | 44.0 | 2.87e-01 | 78.0% | 29.1% |
| 1a9xA04 | 1.10.1030.10 | Mainly Alpha › Orthogonal Bundle › Carbamoyl Phosphate Synthetase; Chain A, domain 4 › Carbamoyl-phosphate synthetase, large subunit oligomerisation domain | 0.60 | 45.0 | 3.26e-01 | 82.0% | 30.0% |
| 4e4yA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 49.0 | 3.15e-01 | 94.0% | 95.0% |
| 4iv6B01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.55 | 42.0 | 3.33e-01 | 90.0% | 74.1% |
| 7ymiD01 | 1.20.85.10 | Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like | 0.51 | 44.0 | 3.03e-01 | 100.0% | 60.0% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4058428 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.92 | 65.0 | 6.32e-01 | 74.0% | 67.3% |
| 5045263 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.92 | 67.0 | 5.54e-01 | 76.0% | 47.5% |
| 3279727 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.91 | 72.0 | 7.26e-01 | 94.0% | 84.0% |
| 4979010 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.90 | 66.0 | 6.61e-01 | 76.0% | 80.0% |
| 5076430 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.90 | 65.0 | 5.89e-01 | 76.0% | 61.5% |
| 3956681 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.89 | 70.0 | 6.04e-01 | 84.0% | 57.3% |
| 2455631 | 101.1.11.11 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › DUF1778 | 0.89 | 68.0 | 5.64e-01 | 94.0% | 49.4% |
| 4932867 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.88 | 68.0 | 5.36e-01 | 82.0% | 44.2% |
| 4375217 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.88 | 63.0 | 5.30e-01 | 82.0% | 47.5% |
| 3955846 | 101.1.11.30 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › FitA-like_RHH | 0.88 | 74.0 | 6.67e-01 | 90.0% | 73.8% |
| 5050174 | 101.1.11.2 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 | 0.87 | 70.0 | 5.73e-01 | 92.0% | 50.6% |
| 3955892 | 101.1.11.2 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 | 0.84 | 60.0 | 6.07e-01 | 76.0% | 76.0% |
| 3954818 | 101.1.11.2 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 | 0.83 | 68.0 | 5.74e-01 | 92.0% | 55.0% |
| 5029686 | 101.1.11.203 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 | 0.81 | 73.0 | 6.32e-01 | 100.0% | 74.7% |
| 4994233 | 101.1.11.203 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 | 0.80 | 71.0 | 6.09e-01 | 100.0% | 77.5% |
| 4993165 | 101.1.11.203 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 | 0.78 | 70.0 | 5.61e-01 | 100.0% | 64.2% |
| 2081534 | 101.1.11.2 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 | 0.78 | 61.0 | 5.42e-01 | 90.0% | 60.0% |
| 5072014 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.75 | 64.0 | 5.70e-01 | 100.0% | 74.7% |
| 4937892 | 101.1.3.32 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › RHH_1 | 0.74 | 67.0 | 5.26e-01 | 100.0% | 65.0% |
| 5064868 | 101.1.11.203 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 | 0.74 | 64.0 | 5.31e-01 | 100.0% | 62.2% |
| 5050855 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.74 | 66.0 | 6.45e-01 | 100.0% | 90.9% |
| 4649369 | 101.1.11.14 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › ParD | 0.72 | 61.0 | 5.52e-01 | 96.0% | 69.2% |
| 4978071 | 2002.1.1.16 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase | 0.64 | 49.0 | 3.02e-01 | 84.0% | 16.3% |
| 3504836 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.62 | 53.0 | 3.53e-01 | 98.0% | 69.5% |
| 3248146 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.56 | 42.0 | 4.04e-01 | 84.0% | 73.3% |
| 3961914 | 4033.1.1.1 ↗ | alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_dh_N | 0.56 | 41.0 | 3.31e-01 | 88.0% | 88.3% |
| 5009514 | 4033.1.1.1 ↗ | alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_dh_N | 0.55 | 44.0 | 3.45e-01 | 96.0% | 86.4% |
| 297820 | 2007.7.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Precorrin-8X methylmutase CbiC/CobH › Precorrin-8X methylmutase CbiC/CobH › CbiC | 0.52 | 43.0 | 2.94e-01 | 100.0% | 74.2% |
| 3693853 | 210.1.2.8 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › TANGO2 | 0.50 | 40.0 | 2.55e-01 | 90.0% | 88.0% |
D2
medium
residues 74-141
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lpnA00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.58 | 47.0 | 4.20e-01 | 95.6% | 95.2% |
| 2gfhA02 | 1.20.120.710 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain | 0.54 | 39.0 | 3.62e-01 | 77.9% | 66.3% |
| 7ud0A01 | 1.10.579.10 | Mainly Alpha › Orthogonal Bundle › DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3 › DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 | 0.53 | 41.0 | 3.14e-01 | 89.7% | 95.8% |
| 2k9lA00 | 1.10.10.1330 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RNA polymerase sigma-54 factor, core-binding domain | 0.53 | 36.0 | 3.49e-01 | 73.5% | 63.2% |
| 1j8yF01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.51 | 41.0 | 3.83e-01 | 89.7% | 90.7% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3961618 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.55 | 41.0 | 4.36e-01 | 82.4% | 91.7% |
| 3893017 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.55 | 43.0 | 3.94e-01 | 88.2% | 87.4% |
| 3372157 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.53 | 40.0 | 3.78e-01 | 83.8% | 76.5% |
| 4934231 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.51 | 39.0 | 2.87e-01 | 86.8% | 95.8% |
| 3224924 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.51 | 42.0 | 3.52e-01 | 98.5% | 81.5% |
| 3257258 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 34.0 | 3.16e-01 | 72.1% | 69.5% |
| 3930038 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.50 | 40.0 | 3.69e-01 | 94.1% | 67.8% |