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IMGVR_UViG_3300012411_001104-3300012411-Ga0153880_14704532
Arc-VirIMGVR_UViG_3300012411_001104-3300012411-Ga0153880_14704532
Identity
- Kingdom:
- archaea
Quality
89.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 66-210
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1rniA02 | 3.30.2250.10 | Alpha Beta › 2-Layer Sandwich › Prim-pol fold › Bifunctional DNA primase/polymerase domain | 0.63 | 48.0 | 5.31e-01 | 100.0% | 100.0% |
| 2mzjA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.60 | 35.0 | 4.41e-01 | 74.5% | 100.0% |
| 3ibwA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.59 | 33.0 | 4.31e-01 | 71.7% | 100.0% |
| 1vx7G00 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.59 | 36.0 | 3.86e-01 | 73.8% | 71.0% |
| 1cc8A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 31.0 | 4.05e-01 | 71.0% | 100.0% |
| 2atzA00 | 3.90.920.20 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › HP0184-like | 0.58 | 42.0 | 4.00e-01 | 88.3% | 61.9% |
| 1u8sA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 33.0 | 4.25e-01 | 71.0% | 97.6% |
| 2e5jA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.57 | 34.0 | 4.11e-01 | 76.6% | 93.2% |
| 5wm1A02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.57 | 37.0 | 4.20e-01 | 76.6% | 88.1% |
| 4kgmA00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.57 | 45.0 | 3.85e-01 | 84.1% | 91.3% |
| 2cg4A02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.57 | 32.0 | 4.04e-01 | 71.7% | 95.2% |
| 4dezA01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.56 | 34.0 | 3.98e-01 | 73.1% | 85.9% |
| 1qm9A02 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.56 | 33.0 | 4.01e-01 | 75.2% | 93.3% |
| 4oj3B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 35.0 | 4.19e-01 | 86.9% | 95.8% |
| 5yppA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.56 | 33.0 | 4.00e-01 | 82.8% | 92.2% |
| 1sjrA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 38.0 | 4.33e-01 | 85.5% | 94.4% |
| 1qm9A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 37.0 | 4.29e-01 | 83.4% | 100.0% |
| 2hw0A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.54 | 37.0 | 4.10e-01 | 83.4% | 87.0% |
| 1kviA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 31.0 | 3.85e-01 | 71.0% | 100.0% |
| 3o1lB01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.54 | 33.0 | 3.99e-01 | 71.7% | 98.9% |
| 1mw7A03 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.53 | 29.0 | 3.77e-01 | 83.4% | 98.7% |
| 2gqqA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.53 | 31.0 | 3.84e-01 | 71.7% | 96.5% |
| 3vtiA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 32.0 | 3.73e-01 | 83.4% | 88.5% |
| 2dbbA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.53 | 33.0 | 3.94e-01 | 84.8% | 96.8% |
| 2hiyA01 | 3.30.70.1280 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SP0830-like domains | 0.52 | 31.0 | 3.70e-01 | 71.7% | 94.3% |
| 2vfrA03 | 3.30.70.2530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 27.0 | 3.31e-01 | 74.5% | 80.5% |
| 4f67A01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 31.0 | 3.56e-01 | 86.9% | 83.0% |
| 2go8A01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 27.0 | 3.53e-01 | 73.8% | 98.6% |
| 2ia0B02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.51 | 34.0 | 3.90e-01 | 86.2% | 99.0% |
| 1apsA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 33.0 | 3.78e-01 | 91.0% | 95.9% |
| 1x0pA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 32.0 | 3.78e-01 | 87.6% | 95.8% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4962598 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.93 | 62.0 | 5.82e-01 | 94.5% | 57.6% |
| 5041003 | 304.8.1.4 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C | 0.60 | 33.0 | 4.37e-01 | 70.3% | 100.0% |
| 4965406 | 304.8.1.21 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 | 0.60 | 34.0 | 4.34e-01 | 71.0% | 98.8% |
| 4683278 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.60 | 34.0 | 4.29e-01 | 74.5% | 95.3% |
| 3488826 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.59 | 37.0 | 4.37e-01 | 76.6% | 93.7% |
| 5035989 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.58 | 33.0 | 4.09e-01 | 71.7% | 88.9% |
| 3737558 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.58 | 35.0 | 4.24e-01 | 73.8% | 94.4% |
| 5046686 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.58 | 32.0 | 4.19e-01 | 72.4% | 97.5% |
| 4959587 | 862.1.1.3 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol | 0.58 | 51.0 | 4.87e-01 | 100.0% | 81.2% |
| 5080501 | 304.110.1.1 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase | 0.58 | 38.0 | 4.32e-01 | 85.5% | 89.1% |
| 5026802 | 304.110.1.1 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase | 0.57 | 35.0 | 4.16e-01 | 84.8% | 89.0% |
| 7174 | 862.1.1.3 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol | 0.57 | 53.0 | 4.65e-01 | 100.0% | 82.9% |
| 3419617 | 304.9.1.85 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF28947 | 0.56 | 34.0 | 4.15e-01 | 72.4% | 95.6% |
| 4978378 | 304.8.1.4 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C | 0.56 | 32.0 | 3.96e-01 | 71.0% | 92.9% |
| 4085881 | 304.110.1.1 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase | 0.56 | 34.0 | 4.05e-01 | 86.9% | 89.8% |
| 5056106 | 304.8.1.4 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C | 0.56 | 34.0 | 4.22e-01 | 74.5% | 98.9% |
| 3942754 | 304.8.1.21 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 | 0.56 | 32.0 | 4.09e-01 | 71.0% | 100.0% |
| 3385766 | 304.28.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Sec_GG | 0.56 | 33.0 | 3.98e-01 | 73.8% | 92.2% |
| 5072282 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.56 | 32.0 | 3.93e-01 | 71.7% | 90.0% |
| 3718250 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.55 | 34.0 | 4.23e-01 | 74.5% | 100.0% |
| 3410799 | 304.110.1.1 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase | 0.55 | 35.0 | 3.98e-01 | 86.9% | 86.7% |
| 3396887 | 304.110.1.1 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase | 0.54 | 34.0 | 4.06e-01 | 84.8% | 95.8% |
| 4156195 | 304.110.1.1 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase | 0.54 | 33.0 | 3.88e-01 | 85.5% | 88.9% |
| 5055915 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.54 | 32.0 | 3.90e-01 | 71.7% | 94.4% |
| 3989046 | 862.1.1.8 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › AEP-TOTE | 0.54 | 46.0 | 4.06e-01 | 95.9% | 68.4% |
| 3273114 | 304.9.1.23 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_5 | 0.54 | 37.0 | 3.93e-01 | 82.8% | 80.8% |
| 3838420 | 304.110.1.0 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like | 0.54 | 33.0 | 4.01e-01 | 80.7% | 98.9% |
| 5002191 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.52 | 29.0 | 3.61e-01 | 78.6% | 90.6% |
| 4967437 | 304.110.1.0 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like | 0.52 | 32.0 | 3.66e-01 | 83.4% | 86.0% |
| 5060355 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.52 | 32.0 | 3.81e-01 | 73.8% | 92.6% |
| 5036011 | 304.28.1.38 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › CAA_C | 0.51 | 42.0 | 3.84e-01 | 87.6% | 93.2% |
| 5039808 | 304.20.1.4 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › CAA_C | 0.51 | 42.0 | 3.82e-01 | 87.6% | 91.3% |
| 5016775 | 304.122.1.1 ↗ | a+b two layers › Alpha-beta plaits › Nitrogen repressor-like proteins › Nitrogen repressor-like proteins › NRD1_2 | 0.51 | 32.0 | 3.68e-01 | 84.8% | 86.7% |
| 4980945 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.51 | 33.0 | 3.76e-01 | 82.8% | 89.5% |
| 4994579 | 304.59.1.0 ↗ | a+b two layers › Alpha-beta plaits › MTH889-like › MTH889-like | 0.51 | 26.0 | 3.45e-01 | 71.0% | 98.6% |
| 5420 | 304.110.1.1 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase | 0.50 | 33.0 | 3.78e-01 | 91.0% | 95.9% |
| 3217163 | 304.9.1.23 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_5 | 0.50 | 40.0 | 4.22e-01 | 93.1% | 98.4% |
| 4416496 | 304.110.1.4 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › UPF0176_N | 0.50 | 31.0 | 3.60e-01 | 83.4% | 91.6% |
| 3803912 | 304.110.1.4 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › UPF0176_N | 0.50 | 30.0 | 3.49e-01 | 84.8% | 87.4% |
D2
medium
residues 248-305
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6grrB01 | 3.30.457.10 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain | 0.64 | 49.0 | 4.44e-01 | 82.8% | 87.3% |
| 1xipA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.60 | 47.0 | 2.92e-01 | 87.9% | 16.1% |
| 4chjA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 43.0 | 3.39e-01 | 79.3% | 53.2% |
| 2m6nA00 | 2.20.25.20 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.58 | 40.0 | 4.38e-01 | 93.1% | 93.5% |
| 3ak5D02 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.58 | 39.0 | 2.25e-01 | 70.7% | 10.1% |
| 5gaeG01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.57 | 42.0 | 3.84e-01 | 81.0% | 86.4% |
| 1ncsA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.56 | 35.0 | 3.81e-01 | 79.3% | 78.7% |
| 1vjvA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.55 | 39.0 | 2.56e-01 | 77.6% | 93.1% |
| 1sqwA01 | 3.10.450.220 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 41.0 | 3.66e-01 | 86.2% | 72.0% |
| 3x3mA01 | 3.30.2390.20 | Alpha Beta › 2-Layer Sandwich › TTHA1013/TTHA0281-like › Type VII secretion system EccB, repeat 1 domain | 0.55 | 42.0 | 3.82e-01 | 86.2% | 98.8% |
| 3il0A00 | 3.40.350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain | 0.54 | 36.0 | 2.87e-01 | 70.7% | 52.3% |
| 4a17E01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.53 | 40.0 | 3.59e-01 | 82.8% | 85.9% |
| 3fjuB00 | 3.30.40.170 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.53 | 38.0 | 3.70e-01 | 77.6% | 86.2% |
| 1ywyA00 | 3.40.1170.40 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › Protein of unknown function DUF3203 | 0.53 | 37.0 | 3.45e-01 | 74.1% | 64.9% |
| 2r19A00 | 2.60.450.10 | Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › Lipopolysaccharide (LPS) transport protein A like domain | 0.53 | 45.0 | 3.48e-01 | 98.3% | 97.0% |
| 6jwfA01 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.53 | 39.0 | 2.46e-01 | 84.5% | 65.7% |
| 1r75A00 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.52 | 39.0 | 3.24e-01 | 82.8% | 61.8% |
| 2y8nB02 | 2.20.70.100 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.52 | 32.0 | 3.42e-01 | 79.3% | 77.3% |
| 4pavB00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.52 | 38.0 | 2.99e-01 | 79.3% | 75.6% |
| 3x3nA04 | 2.40.50.910 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Type VII secretion system EccB, repeat 3 domain | 0.52 | 41.0 | 3.73e-01 | 94.8% | 89.9% |
| 1x9zA01 | 3.30.1540.20 | Alpha Beta › 2-Layer Sandwich › formyl-coa transferase, domain 3 › MutL, C-terminal domain, dimerisation subdomain | 0.51 | 39.0 | 3.50e-01 | 89.7% | 83.9% |
| 1k0eB00 | 3.60.120.10 | Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase | 0.51 | 39.0 | 2.47e-01 | 91.4% | 95.9% |
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 35.0 | 3.45e-01 | 72.4% | 75.4% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4940785 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.84 | 76.0 | 5.99e-01 | 100.0% | 52.2% |
| 3668896 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.70 | 54.0 | 3.26e-01 | 87.9% | 16.2% |
| 5003468 | 375.1.1.15 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 | 0.68 | 62.0 | 5.00e-01 | 100.0% | 80.0% |
| 3229069 | 633.23.1.5 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like | 0.66 | 40.0 | 2.67e-01 | 84.5% | 16.7% |
| 4014129 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.65 | 51.0 | 3.08e-01 | 87.9% | 15.1% |
| 4014565 | 5.1.5.128 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_NUP159_NUP214 | 0.65 | 51.0 | 3.07e-01 | 87.9% | 14.6% |
| 3695948 | 5.1.4.56 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › NUP214 | 0.64 | 50.0 | 2.95e-01 | 86.2% | 13.9% |
| 3999839 | 5.1.5.73 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PEP5_VPS11_N | 0.63 | 50.0 | 3.07e-01 | 87.9% | 19.4% |
| 4030189 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.62 | 42.0 | 4.21e-01 | 72.4% | 68.3% |
| 4026536 | 220.1.1.53 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › ISP1_C | 0.62 | 45.0 | 3.59e-01 | 79.3% | 62.1% |
| 3786743 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.62 | 42.0 | 2.69e-01 | 87.9% | 15.4% |
| 5052723 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.62 | 46.0 | 4.12e-01 | 82.8% | 57.5% |
| 4580534 | 241.3.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › N domain of copper amine oxidase › N domain of copper amine oxidase › Cu_amine_oxidN1 | 0.61 | 46.0 | 3.79e-01 | 82.8% | 61.8% |
| 3169843 | 5.1.4.56 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › NUP214 | 0.61 | 47.0 | 2.91e-01 | 87.9% | 14.6% |
| 4606694 | 4099.1.1.26 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Kre28 | 0.59 | 44.0 | 3.90e-01 | 79.3% | 97.6% |
| 3598119 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.59 | 42.0 | 4.02e-01 | 75.9% | 67.1% |
| 5021782 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.59 | 41.0 | 3.39e-01 | 75.9% | 50.4% |
| 3911019 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.58 | 41.0 | 2.75e-01 | 77.6% | 20.1% |
| 3787920 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.58 | 45.0 | 2.84e-01 | 87.9% | 19.2% |
| 3241422 | 3755.3.1.627 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › CNH | 0.58 | 44.0 | 2.60e-01 | 86.2% | 14.3% |
| 3628498 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.56 | 37.0 | 3.52e-01 | 84.5% | 55.7% |
| 3476478 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 40.0 | 3.45e-01 | 77.6% | 56.8% |
| 4169657 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.55 | 37.0 | 3.92e-01 | 70.7% | 90.0% |
| 4057793 | 71.1.1.3 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB | 0.55 | 39.0 | 2.93e-01 | 79.3% | 41.2% |
| 3794324 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.55 | 36.0 | 3.48e-01 | 82.8% | 57.1% |
| 4585317 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.55 | 37.0 | 3.81e-01 | 70.7% | 78.2% |
| 3397452 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.54 | 36.0 | 3.58e-01 | 84.5% | 65.0% |
| 4012772 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 41.0 | 3.26e-01 | 84.5% | 51.2% |
| 4193845 | 5.1.4.279 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF26550 | 0.54 | 44.0 | 2.72e-01 | 93.1% | 15.6% |
| 3276429 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.54 | 43.0 | 2.72e-01 | 87.9% | 35.5% |
| 4028249 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.54 | 38.0 | 3.91e-01 | 77.6% | 85.2% |
| 3828657 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 38.0 | 3.33e-01 | 79.3% | 78.0% |
| 5019170 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.52 | 40.0 | 3.20e-01 | 82.8% | 42.6% |
| 3363052 | 386.1.1.207 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED_2 | 0.52 | 37.0 | 3.65e-01 | 82.8% | 69.2% |
D3
medium
residues 322-379
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5z7qA00 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.64 | 52.0 | 3.79e-01 | 94.8% | 60.8% |
| 4id0A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.63 | 51.0 | 4.14e-01 | 89.7% | 68.8% |
| 2cwoA01 | 1.20.58.1200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RNA silencing suppressor P21, N-terminal domain | 0.61 | 49.0 | 4.63e-01 | 94.8% | 91.9% |
| 3k3oA02 | 1.20.58.1360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 50.0 | 4.52e-01 | 96.6% | 88.1% |
| 1oxjA02 | 1.25.40.170 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Smaug, PHAT domain | 0.60 | 50.0 | 4.18e-01 | 98.3% | 58.7% |
| 4nuuB02 | 1.20.58.830 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 51.0 | 4.03e-01 | 96.6% | 88.6% |
| 2ficB00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.59 | 44.0 | 3.08e-01 | 82.8% | 72.6% |
| 2zt5A02 | 3.30.40.230 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.59 | 39.0 | 3.54e-01 | 70.7% | 52.4% |
| 3layF00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.58 | 43.0 | 3.94e-01 | 79.3% | 69.2% |
| 1wleA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.58 | 41.0 | 3.44e-01 | 79.3% | 91.2% |
| 1vfiA00 | 1.10.246.100 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Vanadium-binding protein 2 | 0.58 | 41.0 | 3.61e-01 | 77.6% | 50.5% |
| 4i1eA03 | 1.25.10.30 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › IP3 receptor type 1 binding core, RIH domain | 0.58 | 46.0 | 3.59e-01 | 93.1% | 66.2% |
| 3nb2A02 | 1.25.40.300 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Putative secreted effector protein | 0.56 | 45.0 | 3.48e-01 | 100.0% | 57.4% |
| 2i7uA00 | 6.10.250.1010 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.55 | 38.0 | 3.75e-01 | 74.1% | 74.2% |
| 2uxwA01 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.54 | 40.0 | 2.92e-01 | 82.8% | 53.2% |
| 6oi7A01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.53 | 41.0 | 2.98e-01 | 91.4% | 33.2% |
| 2dk8A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 41.0 | 4.03e-01 | 91.4% | 95.4% |
| 2k85A00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.53 | 43.0 | 4.18e-01 | 96.6% | 89.2% |
| 1e91A00 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.52 | 44.0 | 3.96e-01 | 100.0% | 74.1% |
| 2uvaG06 | 1.20.930.70 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.52 | 43.0 | 3.53e-01 | 100.0% | 60.5% |
| 2p7vA00 | 1.20.120.1370 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Regulator of RNA polymerase sigma(70) subunit, domain 4 | 0.51 | 41.0 | 3.25e-01 | 100.0% | 76.8% |
| 1xl3C00 | 1.20.1280.80 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.51 | 37.0 | 3.26e-01 | 79.3% | 51.6% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 36.0 | 3.51e-01 | 75.9% | 69.2% |
| 3vkgA14 | 6.10.140.1060 | Special › Helix non-globular › Helix Hairpins › | 0.50 | 36.0 | 3.38e-01 | 79.3% | 57.5% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3496281 | 206.1.1.70 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 | 0.74 | 53.0 | 3.17e-01 | 77.6% | 11.1% |
| 3329196 | 604.6.1.1 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT | 0.69 | 57.0 | 4.83e-01 | 94.8% | 80.0% |
| 3516337 | 604.7.1.0 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A | 0.67 | 54.0 | 4.44e-01 | 91.4% | 98.2% |
| 3553985 | 109.4.1.148 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EST1_DNA_bind,EST1 | 0.66 | 55.0 | 3.21e-01 | 96.6% | 12.7% |
| 3989579 | 2004.1.1.430 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn | 0.64 | 51.0 | 2.98e-01 | 100.0% | 10.2% |
| 3901314 | 601.1.2.121 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › 4HB_KIF14 | 0.63 | 51.0 | 4.00e-01 | 94.8% | 67.1% |
| 3697205 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.62 | 50.0 | 4.60e-01 | 94.8% | 85.0% |
| 4018180 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.61 | 49.0 | 3.30e-01 | 94.8% | 40.0% |
| 4946650 | 633.6.1.1 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1 | 0.59 | 44.0 | 3.33e-01 | 82.8% | 51.3% |
| 4045132 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.59 | 42.0 | 3.48e-01 | 77.6% | 55.5% |
| 5035050 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.58 | 46.0 | 4.07e-01 | 96.6% | 83.7% |
| 3678192 | 192.5.1.0 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat | 0.58 | 43.0 | 3.29e-01 | 82.8% | 93.3% |
| 3743047 | 604.5.1.28 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › TBCC_N | 0.57 | 47.0 | 4.22e-01 | 96.6% | 92.9% |
| 3652636 | 101.1.1.295 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_70 | 0.56 | 43.0 | 3.92e-01 | 86.2% | 76.2% |
| 5035948 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 45.0 | 4.16e-01 | 96.6% | 97.5% |
| 3287123 | 4168.1.1.0 ↗ | alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain | 0.55 | 46.0 | 4.13e-01 | 96.6% | 69.4% |
| 3579266 | 5055.1.1.11 ↗ | extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel › Cation_ATPase_N | 0.55 | 40.0 | 3.68e-01 | 77.6% | 68.0% |
| 3960422 | 633.6.1.0 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like | 0.53 | 42.0 | 3.18e-01 | 91.4% | 52.7% |
| 3845878 | 621.1.1.0 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0.52 | 43.0 | 4.04e-01 | 94.8% | 96.0% |
| 3594097 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.52 | 42.0 | 3.77e-01 | 93.1% | 79.8% |
| 4530490 | 3455.1.1.0 ↗ | alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors | 0.50 | 40.0 | 3.57e-01 | 93.1% | 84.4% |