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IMGVR_UViG_3300012973_000622-3300012973-Ga0123351_100067217
Arc-VirIMGVR_UViG_3300012973_000622-3300012973-Ga0123351_100067217
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-132
Domain cluster:
rep: OP947159.1__WBC28288.1__DPMD02_24__00025__D7-135
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4divV01 | 2.40.30.200 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.72 | 63.0 | 6.24e-01 | 100.0% | 89.8% |
| 3eaaA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.70 | 63.0 | 5.89e-01 | 100.0% | 78.4% |
| 4ci2B02 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.66 | 41.0 | 4.26e-01 | 96.2% | 65.6% |
| 2e9wB05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 33.0 | 3.86e-01 | 91.6% | 70.3% |
| 3so5A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 36.0 | 3.99e-01 | 92.4% | 68.6% |
| 2w59A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 34.0 | 3.89e-01 | 91.6% | 69.0% |
| 2bbeA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 32.0 | 3.63e-01 | 83.2% | 64.1% |
| 3e3pA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.61 | 34.0 | 4.19e-01 | 89.3% | 89.7% |
| 2vtfA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 30.0 | 3.49e-01 | 82.4% | 64.8% |
| 3luyA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.59 | 32.0 | 3.75e-01 | 89.3% | 76.4% |
| 6toaF01 | 3.30.2000.30 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.56 | 49.0 | 4.97e-01 | 97.7% | 95.4% |
| 1xkpB00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.56 | 35.0 | 3.67e-01 | 99.2% | 67.8% |
| 3dmbA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 43.0 | 4.19e-01 | 100.0% | 74.0% |
| 2x1wL02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 33.0 | 3.69e-01 | 92.4% | 75.2% |
| 1vs3A02 | 3.30.70.660 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain | 0.55 | 36.0 | 3.54e-01 | 83.2% | 60.4% |
| 1lp9E02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 28.0 | 3.42e-01 | 91.6% | 77.5% |
| 3bgaA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 32.0 | 3.46e-01 | 84.0% | 67.6% |
| 2f7vA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 34.0 | 3.68e-01 | 90.1% | 75.0% |
| 2gjvA00 | 3.30.2000.10 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like | 0.53 | 47.0 | 4.66e-01 | 99.2% | 91.9% |
| 3njaA02 | 2.10.70.100 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.53 | 20.0 | 3.30e-01 | 99.2% | 97.8% |
| 1vm0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.52 | 34.0 | 3.94e-01 | 99.2% | 92.5% |
| 1k8wA01 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.52 | 42.0 | 3.48e-01 | 88.5% | 52.7% |
| 6ryvA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 25.0 | 3.35e-01 | 97.7% | 90.8% |
| 4hudA01 | 3.30.2000.40 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser | 0.51 | 46.0 | 3.95e-01 | 99.2% | 76.7% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4059301 | 1.1.13.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like | 0.88 | 70.0 | 7.70e-01 | 99.2% | 98.2% |
| 3980535 | 1.1.13.51 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_P2_GpU | 0.82 | 73.0 | 7.23e-01 | 99.2% | 89.6% |
| 3941539 | 1.1.13.40 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_min_tail | 0.81 | 61.0 | 6.81e-01 | 96.2% | 97.1% |
| 3164699 | 1.1.13.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DNA_circ_N | 0.81 | 66.0 | 7.06e-01 | 100.0% | 98.3% |
| 3969448 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.79 | 60.0 | 6.68e-01 | 95.4% | 99.0% |
| 5062396 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.78 | 72.0 | 7.01e-01 | 95.4% | 96.4% |
| 3981654 | 1.1.13.40 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_min_tail | 0.78 | 60.0 | 6.51e-01 | 95.4% | 95.5% |
| 2471641 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.76 | 68.0 | 6.50e-01 | 100.0% | 83.9% |
| 4873215 | 1.1.13.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2001 | 0.76 | 65.0 | 6.41e-01 | 100.0% | 86.4% |
| 3943681 | 1.1.13.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like | 0.76 | 71.0 | 6.78e-01 | 100.0% | 96.7% |
| 4995819 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.75 | 69.0 | 6.57e-01 | 100.0% | 95.3% |
| 5004559 | 1.1.13.75 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › CIS_tube | 0.75 | 68.0 | 6.80e-01 | 96.9% | 100.0% |
| 5003885 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.74 | 66.0 | 6.41e-01 | 100.0% | 87.6% |
| 2471637 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.73 | 68.0 | 6.48e-01 | 100.0% | 88.6% |
| 3580020 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.73 | 68.0 | 5.89e-01 | 100.0% | 81.0% |
| 2832216 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.72 | 66.0 | 6.29e-01 | 100.0% | 90.2% |
| 4034209 | 1.1.13.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail | 0.71 | 66.0 | 6.56e-01 | 99.2% | 98.5% |
| 3943316 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.71 | 66.0 | 6.17e-01 | 100.0% | 85.0% |
| 5011413 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.70 | 33.0 | 3.92e-01 | 86.3% | 64.4% |
| 4057590 | 1.1.5.86 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN3 | 0.69 | 47.0 | 4.64e-01 | 100.0% | 65.0% |
| 5083300 | 1.1.13.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 | 0.60 | 56.0 | 5.42e-01 | 100.0% | 90.3% |
| 2771056 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.60 | 33.0 | 3.76e-01 | 88.5% | 71.9% |
| 3285688 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.58 | 31.0 | 3.58e-01 | 98.5% | 68.4% |
| 4939419 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.58 | 30.0 | 3.53e-01 | 99.2% | 71.8% |
| 4402197 | 11.1.1.236 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Mannosidase_ig | 0.57 | 31.0 | 3.62e-01 | 83.2% | 72.6% |
| 5064236 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.56 | 31.0 | 3.36e-01 | 98.5% | 60.9% |
| 70450 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.56 | 32.0 | 3.35e-01 | 99.2% | 58.4% |
| 4934997 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.56 | 33.0 | 3.43e-01 | 99.2% | 61.7% |
| 4994607 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.55 | 32.0 | 3.37e-01 | 99.2% | 62.6% |
| 3428351 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.55 | 38.0 | 3.34e-01 | 89.3% | 47.2% |
| 4275176 | 304.102.1.5 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,DKCLD,TruB_C_2 | 0.54 | 38.0 | 3.22e-01 | 88.5% | 40.9% |
| 4331416 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.54 | 44.0 | 3.73e-01 | 87.8% | 58.6% |
| 3710599 | 304.102.1.5 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,DKCLD,TruB_C_2 | 0.54 | 38.0 | 3.07e-01 | 88.5% | 35.2% |
| 3678951 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.53 | 43.0 | 3.58e-01 | 88.5% | 55.3% |
| 3807657 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.52 | 43.0 | 3.52e-01 | 88.5% | 52.0% |
| 5074420 | 512.1.1.0 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) | 0.52 | 31.0 | 3.10e-01 | 99.2% | 55.6% |
| 3595076 | 304.102.1.0 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase | 0.52 | 39.0 | 3.16e-01 | 80.2% | 62.2% |
| 4255072 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.52 | 41.0 | 3.61e-01 | 88.5% | 56.4% |
| 3465961 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.52 | 40.0 | 3.47e-01 | 88.5% | 50.5% |
| 4923979 | 304.102.1.5 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,DKCLD,TruB_C_2 | 0.52 | 39.0 | 3.51e-01 | 80.2% | 87.7% |
| 5039332 | 304.102.1.7 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C | 0.52 | 42.0 | 3.39e-01 | 87.8% | 51.9% |
| 4246284 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.51 | 42.0 | 3.53e-01 | 88.5% | 57.3% |
| 4462681 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.51 | 42.0 | 3.52e-01 | 88.5% | 58.7% |
| 4933784 | 304.102.1.7 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C | 0.51 | 41.0 | 3.51e-01 | 87.8% | 60.5% |
| 3415867 | 304.102.1.7 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C | 0.51 | 41.0 | 3.41e-01 | 87.8% | 55.9% |
| 4124427 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.51 | 42.0 | 3.48e-01 | 88.5% | 54.9% |
| 5063453 | 304.102.1.7 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C | 0.51 | 41.0 | 3.40e-01 | 87.8% | 53.5% |
| 4996950 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.51 | 35.0 | 3.55e-01 | 90.1% | 71.9% |
| 3220081 | 304.102.1.7 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C | 0.50 | 41.0 | 3.30e-01 | 87.8% | 54.4% |
| 4595775 | 304.102.1.7 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C | 0.50 | 41.0 | 3.40e-01 | 88.5% | 58.3% |
| 4935771 | 304.8.1.121 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Pus10_C | 0.50 | 41.0 | 3.36e-01 | 88.5% | 54.7% |
D2
high
residues 168-213
Domain cluster:
rep: IMGVR_UViG_3300029305_005928-3300029305-Ga0307249_101033452__D259-301
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01476.27 best | LysM | 53.0 | 3.70e-14 | 97.8% | 95.3% |