←Back to structures
IMGVR_UViG_3300012974_000004-3300012974-Ga0123350_1000043211
Arc-VirIMGVR_UViG_3300012974_000004-3300012974-Ga0123350_1000043211
Identity
- Kingdom:
- archaea
Quality
94.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 36-111
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qlbA04 | 3.10.20.820 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.75 | 50.0 | 4.63e-01 | 80.3% | 55.3% |
| 2g8lB01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.74 | 52.0 | 5.55e-01 | 100.0% | 85.1% |
| 2i5uA00 | 1.10.10.630 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like | 0.67 | 50.0 | 5.03e-01 | 98.7% | 77.9% |
| 2aplA01 | 1.10.8.330 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like | 0.64 | 51.0 | 5.36e-01 | 97.4% | 94.1% |
| 3f2eA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 41.0 | 3.97e-01 | 88.2% | 59.0% |
| 3w0fA02 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.64 | 51.0 | 4.21e-01 | 92.1% | 48.5% |
| 1qdmA03 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.61 | 48.0 | 4.83e-01 | 82.9% | 87.0% |
| 4k7cA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.61 | 45.0 | 2.81e-01 | 77.6% | 26.4% |
| 1ailA00 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.60 | 38.0 | 4.01e-01 | 81.6% | 70.0% |
| 4fx0A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 46.0 | 3.94e-01 | 82.9% | 73.8% |
| 4x9xA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.59 | 50.0 | 3.96e-01 | 100.0% | 47.0% |
| 6e1kA01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 44.0 | 3.94e-01 | 82.9% | 88.4% |
| 6j8eA01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.58 | 43.0 | 3.88e-01 | 78.9% | 85.8% |
| 2h21B01 | 3.90.1410.10 | Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 1 › set domain protein methyltransferase, domain 1 | 0.55 | 42.0 | 2.93e-01 | 81.6% | 24.3% |
| 6tepC02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.55 | 36.0 | 2.80e-01 | 73.7% | 28.2% |
| 1chkA01 | 1.20.141.10 | Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 | 0.55 | 41.0 | 3.43e-01 | 82.9% | 100.0% |
| 3d8lA00 | 1.10.8.940 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein, phage p2 ORF12 | 0.55 | 41.0 | 3.94e-01 | 100.0% | 69.2% |
| 3owaA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.55 | 40.0 | 3.15e-01 | 78.9% | 63.7% |
| 2d5vA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.54 | 40.0 | 4.04e-01 | 94.7% | 78.5% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 38.0 | 4.20e-01 | 100.0% | 98.3% |
| 1n81A00 | 1.10.3030.10 | Mainly Alpha › Orthogonal Bundle › Gametocyte protein Pfg27 › Gametocyte protein Pfg27 | 0.54 | 47.0 | 3.48e-01 | 100.0% | 38.7% |
| 3ig5A04 | 1.10.8.960 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.53 | 38.0 | 4.05e-01 | 82.9% | 86.4% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.53 | 35.0 | 3.59e-01 | 82.9% | 69.3% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.52 | 41.0 | 4.27e-01 | 85.5% | 98.5% |
| 2p5vA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 30.0 | 3.51e-01 | 73.7% | 82.7% |
| 4c3eM00 | 1.20.120.1350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain | 0.51 | 39.0 | 3.10e-01 | 81.6% | 72.3% |
| 3f5cB00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.50 | 40.0 | 3.13e-01 | 90.8% | 69.4% |
| 2vpzC00 | 1.20.1630.10 | Mainly Alpha › Up-down Bundle › Formate dehydrogenase/DMSO reductase fold › Formate dehydrogenase/DMSO reductase domain | 0.50 | 41.0 | 2.86e-01 | 89.5% | 42.4% |
| 2lwxA00 | 1.10.8.840 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain | 0.50 | 45.0 | 4.27e-01 | 100.0% | 97.7% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5080933 | 159.1.2.0 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related | 0.83 | 76.0 | 6.28e-01 | 100.0% | 66.9% |
| 3738184 | 109.4.1.301 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Hid1 | 0.72 | 53.0 | 3.06e-01 | 76.3% | 19.4% |
| 3607267 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.70 | 55.0 | 4.82e-01 | 81.6% | 76.2% |
| 2808456 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.67 | 51.0 | 4.53e-01 | 100.0% | 56.5% |
| 4991000 | 3651.1.1.0 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain | 0.64 | 45.0 | 4.57e-01 | 73.7% | 98.7% |
| 3988736 | 632.17.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › C protein alpha-antigen helical bundle domain › C protein alpha-antigen helical bundle domain | 0.63 | 43.0 | 4.71e-01 | 97.4% | 88.3% |
| 3308688 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.62 | 50.0 | 5.09e-01 | 96.1% | 88.0% |
| 3970538 | 5050.1.1.20 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_4 | 0.62 | 48.0 | 3.58e-01 | 82.9% | 82.7% |
| 4075906 | 5065.1.1.1 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 | 0.61 | 53.0 | 3.68e-01 | 100.0% | 91.6% |
| 4939406 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 37.0 | 2.87e-01 | 82.9% | 26.9% |
| 4554410 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.61 | 54.0 | 3.22e-01 | 98.7% | 85.4% |
| 3267787 | 110.1.1.0 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain | 0.59 | 44.0 | 4.00e-01 | 78.9% | 62.0% |
| 4996117 | 601.5.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Colicin D immunity protein › Colicin D immunity protein | 0.59 | 41.0 | 4.16e-01 | 96.1% | 73.3% |
| 3226184 | 101.1.10.6 ↗ | alpha arrays › HTH › HTH › Cyclin-like › RB_A | 0.57 | 50.0 | 3.62e-01 | 100.0% | 41.8% |
| 4956867 | 7064.1.1.0 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 | 0.56 | 45.0 | 3.70e-01 | 96.1% | 47.9% |
| 5035798 | 5060.1.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › vATP-synt_AC39 | 0.56 | 39.0 | 3.27e-01 | 77.6% | 45.8% |
| 3343255 | 5.1.4.37 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 | 0.55 | 47.0 | 2.86e-01 | 94.7% | 15.7% |
| 3428929 | 101.1.1.138 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › GeBP-like_DBD | 0.55 | 42.0 | 3.89e-01 | 81.6% | 73.0% |
| 4957618 | 5060.1.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › vATP-synt_AC39 | 0.55 | 39.0 | 3.34e-01 | 77.6% | 49.1% |
| 4976947 | 5060.1.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › vATP-synt_AC39 | 0.54 | 40.0 | 3.46e-01 | 80.3% | 50.4% |
| 4997388 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.54 | 47.0 | 3.04e-01 | 97.4% | 93.7% |
| 3784213 | 101.1.1.207 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF6581 | 0.54 | 42.0 | 3.81e-01 | 82.9% | 91.0% |
| 4947303 | 5060.1.1.0 ↗ | alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C | 0.53 | 39.0 | 3.45e-01 | 77.6% | 52.7% |
| 3862729 | 7111.1.1.1 ↗ | alpha bundles › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiq_cyt_C_chap | 0.53 | 47.0 | 3.62e-01 | 100.0% | 93.1% |
| 3471416 | 109.4.1.431 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ERK-JNK_inhib | 0.52 | 39.0 | 3.18e-01 | 81.6% | 44.1% |
| 3874750 | 101.1.1.249 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › SGIII | 0.51 | 38.0 | 3.75e-01 | 86.8% | 75.0% |
| 3930638 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.51 | 41.0 | 3.98e-01 | 92.1% | 78.8% |
| 4212526 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.51 | 45.0 | 3.85e-01 | 97.4% | 82.5% |
| 3956058 | 633.6.1.1 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1 | 0.51 | 44.0 | 3.50e-01 | 94.7% | 54.7% |
| 3283397 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.51 | 38.0 | 3.52e-01 | 78.9% | 98.9% |
| 5050227 | 7014.1.1.2 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE | 0.51 | 39.0 | 3.58e-01 | 84.2% | 75.0% |