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IMGVR_UViG_3300012983_002739-3300012983-Ga0123349_100087638
Arc-VirIMGVR_UViG_3300012983_002739-3300012983-Ga0123349_100087638
Identity
- Kingdom:
- archaea
Quality
73.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-75
Domain cluster:
representative
CATH (50)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4lwsA00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.80 | 57.0 | 5.12e-01 | 77.0% | 55.0% |
| 5wp3B00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.80 | 73.0 | 6.47e-01 | 98.6% | 93.1% |
| 2oerA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.80 | 56.0 | 4.12e-01 | 73.0% | 30.2% |
| 3q5dA02 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.79 | 68.0 | 6.13e-01 | 91.9% | 78.4% |
| 4adnA01 | 1.20.1280.250 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.76 | 60.0 | 5.79e-01 | 95.9% | 74.1% |
| 4ackB00 | 1.25.40.590 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type IV / VI secretion system, DotU | 0.76 | 63.0 | 4.95e-01 | 90.5% | 46.4% |
| 4abnA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.76 | 68.0 | 4.52e-01 | 98.6% | 38.7% |
| 1hr5A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.74 | 44.0 | 5.24e-01 | 77.0% | 91.7% |
| 4oe8C00 | 1.10.8.1170 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.71 | 48.0 | 4.58e-01 | 77.0% | 59.8% |
| 3n71A03 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.71 | 56.0 | 4.05e-01 | 98.6% | 30.0% |
| 2xl4A00 | 1.20.120.1420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › LntA helical domain | 0.70 | 62.0 | 4.97e-01 | 100.0% | 68.0% |
| 1sj8A02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.69 | 60.0 | 5.19e-01 | 100.0% | 71.3% |
| 2ykgA03 | 1.20.1320.30 | Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › | 0.69 | 59.0 | 4.87e-01 | 100.0% | 52.6% |
| 1j1jA01 | 1.20.58.190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 | 0.69 | 61.0 | 5.09e-01 | 100.0% | 68.9% |
| 3f4mA00 | 1.20.1440.160 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like | 0.69 | 59.0 | 4.70e-01 | 97.3% | 54.5% |
| 2olsA01 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.68 | 53.0 | 4.04e-01 | 86.5% | 61.7% |
| 1cnt200 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.68 | 48.0 | 4.01e-01 | 74.3% | 93.8% |
| 4q5nA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.67 | 57.0 | 5.04e-01 | 95.9% | 75.9% |
| 3ls1A00 | 1.20.120.290 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle | 0.67 | 57.0 | 4.82e-01 | 100.0% | 72.9% |
| 2c0kB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.67 | 56.0 | 4.48e-01 | 93.2% | 87.9% |
| 1binA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.66 | 56.0 | 4.48e-01 | 91.9% | 86.0% |
| 3txsC01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.66 | 48.0 | 4.79e-01 | 77.0% | 78.7% |
| 1wkbA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.66 | 55.0 | 4.76e-01 | 94.6% | 62.8% |
| 4hwhE00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.66 | 59.0 | 5.58e-01 | 100.0% | 94.3% |
| 3kyiA00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.66 | 58.0 | 4.86e-01 | 100.0% | 65.6% |
| 2rpaA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.65 | 51.0 | 5.07e-01 | 90.5% | 83.1% |
| 3a98A02 | 1.20.1270.350 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Dedicator of cytokinesis N-terminal subdomain | 0.65 | 47.0 | 4.52e-01 | 93.2% | 65.5% |
| 2ib0A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.65 | 55.0 | 4.64e-01 | 98.6% | 94.8% |
| 3l09A01 | 1.20.58.1460 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 57.0 | 5.20e-01 | 100.0% | 82.7% |
| 3iqcA00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.64 | 53.0 | 4.66e-01 | 97.3% | 76.5% |
| 3n2oA03 | 1.20.58.930 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 51.0 | 4.74e-01 | 87.8% | 72.9% |
| 8e83B01 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.64 | 55.0 | 3.41e-01 | 97.3% | 71.7% |
| 7c1iA01 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.63 | 55.0 | 5.04e-01 | 98.6% | 78.0% |
| 2i0mA02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.63 | 56.0 | 5.05e-01 | 100.0% | 85.1% |
| 7zviA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.63 | 52.0 | 4.51e-01 | 94.6% | 59.8% |
| 1yhuB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.61 | 50.0 | 4.10e-01 | 91.9% | 86.8% |
| 2hjmA01 | 1.20.120.460 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › protein pf1176 like | 0.61 | 47.0 | 4.57e-01 | 89.2% | 74.4% |
| 1f7uA02 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.61 | 51.0 | 4.38e-01 | 95.9% | 67.2% |
| 4u7iA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.61 | 54.0 | 5.02e-01 | 100.0% | 98.9% |
| 1x9fD00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.61 | 50.0 | 4.11e-01 | 91.9% | 88.6% |
| 1yy7A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.60 | 53.0 | 4.75e-01 | 100.0% | 74.3% |
| 2oifB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.60 | 48.0 | 3.93e-01 | 91.9% | 88.1% |
| 3nkzA00 | 1.20.58.380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. | 0.60 | 52.0 | 4.79e-01 | 98.6% | 85.6% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.59 | 49.0 | 4.79e-01 | 94.6% | 80.2% |
| 3mq1A01 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 48.0 | 4.57e-01 | 93.2% | 93.5% |
| 2pkeA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.59 | 47.0 | 4.61e-01 | 95.9% | 79.5% |
| 1cg5B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.58 | 46.0 | 3.86e-01 | 90.5% | 86.5% |
| 4h63K00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 42.0 | 3.89e-01 | 78.4% | 61.2% |
| 4wzxA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.57 | 44.0 | 4.43e-01 | 89.2% | 86.7% |
| 1j1jA02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.55 | 45.0 | 4.41e-01 | 98.6% | 88.2% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3381950 | 109.4.1.1411 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30303 | 0.77 | 66.0 | 4.40e-01 | 93.2% | 35.7% |
| 3740894 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.75 | 65.0 | 6.14e-01 | 95.9% | 93.3% |
| 3573038 | 4207.1.1.99 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › PF28139 | 0.75 | 52.0 | 4.90e-01 | 75.7% | 60.0% |
| 3597993 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.74 | 66.0 | 4.30e-01 | 100.0% | 68.9% |
| 4949603 | 3718.1.1.34 ↗ | alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › PF26161 | 0.73 | 51.0 | 4.85e-01 | 73.0% | 62.4% |
| 4933354 | 3755.3.1.637 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 | 0.73 | 54.0 | 3.73e-01 | 78.4% | 47.5% |
| 4960309 | 5058.1.1.101 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › DUF1622 | 0.72 | 57.0 | 5.04e-01 | 87.8% | 77.3% |
| 4831662 | 5043.1.1.1 ↗ | extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › Htr2 | 0.70 | 50.0 | 5.26e-01 | 75.7% | 92.4% |
| 3309012 | 604.3.1.1 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG | 0.70 | 62.0 | 5.39e-01 | 100.0% | 73.9% |
| 4397441 | 3222.1.1.1 ↗ | a+b complex topology › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › AceK_regulatory | 0.70 | 61.0 | 4.01e-01 | 97.3% | 92.9% |
| 3487862 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.69 | 51.0 | 3.52e-01 | 77.0% | 23.7% |
| 5080404 | 109.4.1.791 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_17 | 0.69 | 53.0 | 4.16e-01 | 83.8% | 42.5% |
| 4584262 | 3222.1.1.1 ↗ | a+b complex topology › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › AceK_regulatory | 0.69 | 60.0 | 3.96e-01 | 97.3% | 95.2% |
| 3902100 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.69 | 50.0 | 4.83e-01 | 77.0% | 67.1% |
| 4412725 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.68 | 57.0 | 4.31e-01 | 94.6% | 38.4% |
| 3605713 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.67 | 59.0 | 5.69e-01 | 100.0% | 89.4% |
| 5053364 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.67 | 57.0 | 4.84e-01 | 98.6% | 88.5% |
| 4949593 | 3718.1.1.0 ↗ | alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT | 0.67 | 56.0 | 5.17e-01 | 93.2% | 76.8% |
| 3995241 | 632.11.1.2 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › DOCK_N | 0.65 | 51.0 | 4.72e-01 | 94.6% | 65.0% |
| 4464661 | 601.3.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt | 0.65 | 56.0 | 4.68e-01 | 100.0% | 68.1% |
| 5020418 | 601.3.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt | 0.65 | 56.0 | 4.61e-01 | 100.0% | 61.4% |
| 3170239 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.64 | 56.0 | 5.29e-01 | 98.6% | 95.6% |
| 3218730 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.63 | 56.0 | 5.62e-01 | 98.6% | 98.7% |
| 3280988 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.62 | 55.0 | 5.45e-01 | 100.0% | 98.8% |
| 3575378 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.62 | 51.0 | 4.77e-01 | 95.9% | 72.6% |
| 3407072 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.62 | 55.0 | 5.38e-01 | 98.6% | 92.5% |
| 3498448 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.61 | 53.0 | 5.23e-01 | 100.0% | 98.8% |
| 3236284 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.61 | 50.0 | 4.93e-01 | 93.2% | 98.8% |
| 3167768 | 604.12.1.113 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › PF31146 | 0.61 | 48.0 | 4.66e-01 | 89.2% | 78.8% |
| 3197542 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.60 | 51.0 | 3.11e-01 | 94.6% | 51.6% |
| 2814210 | 109.4.1.1427 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_6, TPR_8, TPR_19 | 0.60 | 43.0 | 4.33e-01 | 83.8% | 73.7% |
| 3387796 | 604.34.1.1 ↗ | alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase › Arg_decarb_HB | 0.59 | 47.0 | 4.41e-01 | 85.1% | 72.2% |
| 4930533 | 3843.1.1.6 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › MrpF_PhaF | 0.59 | 49.0 | 4.83e-01 | 94.6% | 91.3% |
| 3270441 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.59 | 46.0 | 4.61e-01 | 87.8% | 86.7% |
| 4928814 | 3843.1.1.1 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › Oxidored_q2 | 0.59 | 48.0 | 4.32e-01 | 93.2% | 65.4% |
| 3373782 | 6155.1.1.2 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop | 0.57 | 49.0 | 4.32e-01 | 100.0% | 76.5% |
| 3470048 | 101.6.1.1 ↗ | alpha arrays › HTH › Protein serine/threonine phosphatase 2C-C › Protein serine/threonine phosphatase 2C-C › PP2C_C | 0.57 | 50.0 | 4.77e-01 | 97.3% | 84.7% |
| 3423827 | 138.1.1.0 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain | 0.56 | 43.0 | 4.39e-01 | 85.1% | 87.1% |
| 4001550 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.56 | 41.0 | 4.12e-01 | 78.4% | 78.7% |
| 3781435 | 601.7.1.12 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › SWT1_3rd | 0.55 | 47.0 | 3.90e-01 | 97.3% | 82.9% |
| 3676030 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.55 | 41.0 | 3.04e-01 | 90.5% | 27.4% |
| 3584334 | 604.12.1.56 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ASTER | 0.55 | 45.0 | 4.28e-01 | 94.6% | 77.8% |