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IMGVR_UViG_3300013090_000061-3300013090-Ga0163209_100039018

Arc-Vir

IMGVR_UViG_3300013090_000061-3300013090-Ga0163209_100039018

Quality

73.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-52
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3wrbB02 1.10.700.10 Mainly Alpha › Orthogonal Bundle › Protocatechuate 4,5-dioxygenase; Chain A › Dioxygenase LigAB, LigA subunit 0.52 41.0 3.42e-01 90.4% 72.9%
1qmgA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.51 40.0 2.59e-01 94.2% 70.6%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4410212 102.1.1.51 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › IMS_HHH_1 0.55 38.0 3.47e-01 75.0% 52.0%
4032279 102.1.1.51 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › IMS_HHH_1 0.52 37.0 3.56e-01 75.0% 65.0%
D2 medium residues 53-131
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.69 50.0 4.96e-01 74.7% 98.8%
2xrhA00 1.20.120.1430 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HP0721 helical bundle 0.68 53.0 4.86e-01 82.3% 86.0%
1iurA01 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.68 46.0 5.10e-01 70.9% 88.9%
1xd4A04 1.10.840.10 Mainly Alpha › Orthogonal Bundle › Son of Sevenless (SoS) protein; Chain S, domain 2 › Ras guanine-nucleotide exchange factors catalytic domain 0.67 56.0 4.09e-01 92.4% 59.2%
6ljaA01 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.67 58.0 3.83e-01 100.0% 25.6%
1ihgA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.66 54.0 4.40e-01 88.6% 68.3%
3zheA02 1.25.40.760 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.65 54.0 4.10e-01 96.2% 46.4%
2kj8A00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.65 49.0 4.30e-01 81.0% 72.9%
3ut4A00 1.25.40.750 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Domain of unknown function DUF5071 0.64 48.0 4.18e-01 86.1% 50.8%
2lsgA00 1.20.58.1280 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DNA repair protein Rev1, C-terminal domain 0.64 53.0 5.01e-01 94.9% 83.5%
3pubA01 1.10.10.2400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain 0.63 49.0 5.05e-01 87.3% 91.9%
6wy9B01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.62 53.0 4.73e-01 96.2% 80.2%
7cgfA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.62 51.0 3.42e-01 93.7% 29.5%
3qc1A01 1.25.40.540 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TAP42-like family 0.61 50.0 4.04e-01 88.6% 57.0%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.61 47.0 4.79e-01 84.8% 84.4%
4dmvA01 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 47.0 4.62e-01 86.1% 76.5%
3onjA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.61 46.0 4.29e-01 79.7% 86.6%
1wn0A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.61 42.0 3.63e-01 73.4% 91.6%
1vu2201 1.20.58.1070 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 50.0 3.95e-01 92.4% 68.2%
2p58C00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 40.0 3.62e-01 91.1% 49.1%
3k8pC01 1.20.58.1440 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 44.0 4.06e-01 78.5% 92.4%
1juqC00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.60 53.0 4.33e-01 100.0% 82.6%
8a0rA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 49.0 4.26e-01 93.7% 75.4%
2cwyA00 1.10.3450.10 Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › TTHA0068-like 0.60 40.0 3.85e-01 87.3% 59.1%
1sr2A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.59 41.0 3.62e-01 86.1% 49.1%
3eslA01 1.20.58.2070 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 47.0 4.78e-01 89.9% 92.0%
2lhrA00 1.20.58.1270 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 41.0 4.13e-01 91.1% 73.1%
1aj3A00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 47.0 4.44e-01 89.9% 98.0%
3iq1B00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.58 46.0 3.76e-01 88.6% 89.3%
2c41C01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.58 46.0 3.86e-01 89.9% 94.6%
3iqcA00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.58 44.0 3.86e-01 81.0% 59.7%
3hiuD00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.58 47.0 3.91e-01 93.7% 92.1%
2ycdA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 49.0 4.35e-01 96.2% 83.8%
3eabE00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.57 45.0 4.39e-01 87.3% 91.9%
5u9nB00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.57 41.0 3.69e-01 79.7% 80.0%
3kwoA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.57 46.0 3.92e-01 96.2% 99.3%
1sj8A02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.56 43.0 3.75e-01 82.3% 62.3%
2qqyA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.56 46.0 3.90e-01 92.4% 97.1%
2katA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 45.0 4.09e-01 97.5% 63.5%
1nfvA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.56 46.0 3.68e-01 93.7% 80.5%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.56 46.0 4.74e-01 91.1% 97.3%
2jbwA01 1.20.1440.110 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase 0.55 47.0 4.37e-01 96.2% 82.5%
1wfdA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.55 45.0 4.37e-01 94.9% 82.8%
2chpA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.55 44.0 3.70e-01 91.1% 94.6%
3t9jA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.55 45.0 3.81e-01 94.9% 100.0%
3agtA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.55 43.0 3.63e-01 84.8% 58.6%
4g10A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 43.0 3.71e-01 89.9% 71.3%
1hxiA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 48.0 4.32e-01 100.0% 90.2%
4hyjA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.54 42.0 3.01e-01 82.3% 36.4%
4p3fA00 1.10.3450.40 Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › Signal recognition particle, SRP68 subunit, RNA-binding domain 0.54 46.0 3.52e-01 94.9% 43.0%
1jogA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.54 46.0 3.89e-01 94.9% 77.8%
2l3lA01 1.20.58.1250 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain 0.54 41.0 3.84e-01 86.1% 72.6%
1kpgD00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 43.0 3.00e-01 89.9% 88.3%
3uj9A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 40.0 2.89e-01 86.1% 81.4%
3cx3B01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.51 44.0 3.64e-01 100.0% 95.5%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4021494 226.1.1.0 a+b two layers › POZ domain › POZ domain › POZ domain 0.74 65.0 5.09e-01 98.7% 68.8%
3687436 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.74 60.0 4.27e-01 88.6% 71.9%
3598515 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.71 57.0 5.38e-01 87.3% 73.7%
3616859 532.2.1.0 alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains 0.70 56.0 5.71e-01 89.9% 89.3%
3668286 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.69 54.0 5.66e-01 83.5% 94.3%
4049391 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.69 47.0 4.46e-01 70.9% 80.0%
3815122 604.12.1.68 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DUF6857 0.68 57.0 4.35e-01 91.1% 74.4%
146980 3201.1.1.1 alpha arrays › HP0721 › HP0721 › HP0721 › DUF1104 0.68 53.0 4.86e-01 82.3% 86.0%
4954763 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.67 54.0 5.19e-01 87.3% 77.8%
3824114 604.6.1.24 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › DUF6857 0.67 55.0 4.67e-01 91.1% 96.9%
3795795 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 55.0 3.93e-01 92.4% 37.9%
5026738 109.10.1.1 alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin 0.66 56.0 4.62e-01 97.5% 87.3%
4975485 4995.1.1.0 alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like 0.65 48.0 4.93e-01 82.3% 84.0%
3626530 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.65 49.0 4.58e-01 79.7% 85.3%
5045531 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.64 49.0 4.86e-01 86.1% 94.1%
3897356 603.1.1.17 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE 0.64 54.0 4.04e-01 96.2% 78.6%
3938124 109.4.1.16 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PUF 0.64 54.0 3.49e-01 98.7% 23.2%
3562699 3736.1.1.0 alpha superhelices › NLRC4 helical domain HD2 › NLRC4 helical domain HD2 › NLRC4 helical domain HD2 0.63 55.0 4.86e-01 100.0% 99.2%
3896722 622.6.1.0 alpha bundles › YvfG-like › NLR family member X1 C-terminal domain › NLR family member X1 C-terminal domain 0.63 53.0 3.53e-01 94.9% 46.5%
5057382 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 48.0 3.53e-01 91.1% 30.7%
3603360 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.62 52.0 4.66e-01 94.9% 96.5%
5000604 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 54.0 3.79e-01 100.0% 49.4%
3237156 604.12.1.4 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT1 0.61 51.0 4.30e-01 91.1% 83.7%
3526105 604.3.1.18 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › PF27519 0.61 49.0 4.77e-01 89.9% 93.3%
3477207 4320.1.1.1 alpha superhelices › Taf5 N-terminal domain-like › Taf5 N-terminal domain-like › Taf5 N-terminal domain-like › TFIID_NTD2 0.61 50.0 3.84e-01 92.4% 84.1%
5070237 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.61 47.0 4.56e-01 86.1% 98.9%
3501998 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.61 49.0 4.79e-01 87.3% 87.1%
4974646 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.61 46.0 4.23e-01 89.9% 61.9%
3511170 1134.1.1.0 alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.60 48.0 4.90e-01 89.9% 92.0%
3736709 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.60 50.0 3.72e-01 96.2% 90.0%
3309583 604.12.1.65 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT_ATG1 0.59 46.0 4.63e-01 83.5% 92.5%
3940780 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.59 49.0 4.64e-01 96.2% 99.0%
4985810 3997.1.1.1 alpha arrays › Helical insertion domain in magnesium chelatase catalytic subunit › Helical insertion domain in magnesium chelatase catalytic subunit › Helical insertion domain in magnesium chelatase catalytic subunit › CobN-Mg_chel 0.59 39.0 3.06e-01 78.5% 32.1%
3596558 633.1.1.0 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.59 46.0 3.69e-01 91.1% 43.2%
3295883 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.58 45.0 3.86e-01 91.1% 51.2%
3334062 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.58 47.0 4.73e-01 92.4% 91.6%
54369 4266.2.1.0 alpha bundles › Hyaluronidase domain-like › TTHA0068-like › TTHA0068-like 0.58 39.0 3.77e-01 86.1% 59.6%
3608864 109.4.1.592 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps53_N 0.58 48.0 2.97e-01 100.0% 28.5%
5082862 150.1.1.3 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin 0.58 48.0 3.86e-01 94.9% 91.5%
3698487 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 48.0 3.15e-01 94.9% 22.4%
3708191 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.57 47.0 4.85e-01 94.9% 100.0%
4935971 150.1.1.3 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin 0.56 47.0 3.86e-01 94.9% 97.4%
3391109 3684.1.1.21 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › TMEM138 0.56 46.0 3.85e-01 91.1% 68.6%
3788338 604.12.1.9 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT2 0.56 43.0 4.47e-01 84.8% 90.5%
3318084 109.4.1.1269 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif 0.56 45.0 3.21e-01 92.4% 36.9%
3226217 601.1.2.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.55 45.0 3.78e-01 93.7% 94.5%
3833990 4106.1.1.1 few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.55 47.0 3.73e-01 100.0% 91.4%
4617196 185.1.1.1 alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Tryp_alpha_amyl 0.54 44.0 4.25e-01 89.9% 100.0%
5051465 601.1.2.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.51 43.0 3.64e-01 92.4% 86.2%