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IMGVR_UViG_3300013099_000017-3300013099-Ga0164315_10000001120

Arc-Vir

IMGVR_UViG_3300013099_000017-3300013099-Ga0164315_10000001120

Identity

Kingdom:
archaea

Quality

92.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-81
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2w42B02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.73 37.0 2.64e-01 100.0% 16.9%
4k2xB02 3.30.70.2450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.73 41.0 4.11e-01 100.0% 53.7%
2c43A02 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.63 55.0 4.79e-01 100.0% 97.6%
5bulA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 37.0 2.37e-01 100.0% 11.7%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 30.0 3.20e-01 100.0% 54.2%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.58 29.0 3.32e-01 100.0% 62.1%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 45.0 4.31e-01 100.0% 73.7%
3c6kA01 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.56 41.0 3.93e-01 100.0% 67.0%
3v7dD02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 43.0 2.86e-01 86.1% 32.9%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.55 41.0 4.35e-01 100.0% 97.0%
4gn2A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 47.0 3.41e-01 100.0% 85.4%
4hi8B00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.54 37.0 3.89e-01 73.4% 87.5%
7r6yA01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.53 39.0 3.80e-01 98.7% 69.6%
2grgA01 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.53 44.0 4.36e-01 100.0% 89.2%
7fisA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 44.0 3.12e-01 100.0% 95.6%
1v5vA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.52 38.0 3.67e-01 100.0% 67.4%
1e2tA03 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.52 41.0 3.64e-01 97.5% 59.0%
3girA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.52 38.0 3.71e-01 98.7% 72.1%
7oo1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.51 39.0 3.95e-01 98.7% 83.1%
3gg8C03 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.51 36.0 3.46e-01 100.0% 62.9%
8eq1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.51 36.0 3.55e-01 100.0% 69.3%
3jcuO01 2.40.160.30 Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor 0.51 40.0 3.20e-01 89.9% 89.8%
3v8uA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.50 40.0 3.16e-01 89.9% 89.4%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4273393 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.69 44.0 4.12e-01 100.0% 53.7%
1176816 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.68 38.0 3.52e-01 100.0% 42.3%
3743149 244.1.1.11 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › SE 0.65 37.0 3.36e-01 100.0% 41.0%
1692470 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.64 41.0 3.69e-01 100.0% 46.0%
4011873 244.1.1.11 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › SE 0.64 36.0 3.43e-01 100.0% 45.3%
4079241 301.8.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › ACPS 0.62 53.0 4.67e-01 98.7% 90.8%
4989083 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.61 37.0 4.18e-01 98.7% 85.5%
3298884 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.61 35.0 3.15e-01 100.0% 38.3%
1787989 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.61 37.0 3.33e-01 100.0% 43.5%
3924542 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.60 36.0 3.21e-01 100.0% 41.8%
4929578 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.60 46.0 4.00e-01 100.0% 54.2%
4089905 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.60 35.0 3.19e-01 100.0% 41.8%
4653584 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.59 35.0 3.07e-01 97.5% 37.5%
3827210 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.59 34.0 2.86e-01 100.0% 31.9%
3587052 331.2.1.0 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.59 44.0 4.19e-01 100.0% 67.4%
3170809 60.2.1.1 ↗ beta barrels › SPOC domain-like › Sld3 N-terminal domain › Sld3 N-terminal domain › Sld3_N 0.58 40.0 3.56e-01 100.0% 49.6%
3388732 331.1.1.5 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N 0.56 41.0 4.09e-01 100.0% 72.9%
3834027 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.56 31.0 2.84e-01 97.5% 37.3%
3785321 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 47.0 4.41e-01 100.0% 74.0%
3718188 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.55 46.0 4.07e-01 93.7% 82.5%
3838482 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.55 50.0 3.40e-01 100.0% 32.7%
3365579 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.55 39.0 3.77e-01 77.2% 80.0%
5026576 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.55 39.0 3.90e-01 100.0% 71.8%
1225893 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.54 35.0 3.11e-01 100.0% 44.9%
3666797 5.1.4.45 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_3 0.54 42.0 2.69e-01 86.1% 23.5%
3681076 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.54 31.0 2.70e-01 100.0% 33.8%
3701279 304.107.1.10 ↗ a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BBS7_pf 0.52 38.0 3.64e-01 100.0% 65.3%
4960303 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.52 45.0 4.31e-01 100.0% 96.8%
3991921 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 42.0 3.77e-01 91.1% 77.2%
3201503 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 45.0 4.52e-01 98.7% 96.2%
5073955 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 40.0 3.54e-01 100.0% 55.8%
4938399 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.52 42.0 3.81e-01 91.1% 77.3%
3583039 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 42.0 3.56e-01 91.1% 69.6%
4679943 223.2.1.19 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.51 45.0 3.61e-01 100.0% 58.2%
3479394 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 41.0 3.54e-01 91.1% 69.6%
4977778 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 42.0 3.77e-01 100.0% 63.5%
3285421 9.14.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W 0.51 41.0 3.46e-01 92.4% 75.9%
3742968 223.5.1.0 ↗ a+b three layers › Profilin-like › YNR034W-A-like › YNR034W-A-like 0.51 40.0 4.08e-01 100.0% 88.0%
4986320 5090.1.1.6 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › S-layer 0.51 45.0 3.90e-01 100.0% 96.0%
5008207 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 43.0 4.38e-01 98.7% 98.8%
4999664 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 42.0 3.61e-01 100.0% 57.6%