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IMGVR_UViG_3300013099_000017-3300013099-Ga0164315_10000001163
Arc-VirIMGVR_UViG_3300013099_000017-3300013099-Ga0164315_10000001163
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 8-81
Domain cluster:
rep: EF523948.1__ABP63626.1__BcepGomrgene55__00055__D5-63
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00472.27 best | RF-1 | 50.7 | 2.30e-13 | 100.0% | 56.9% |
D2
medium
residues 87-129
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2drpA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.65 | 46.0 | 4.90e-01 | 97.7% | 100.0% |
| 4bmjA00 | 6.20.250.40 | Special › Other non-globular › Double Stranded RNA Binding Domain › | 0.64 | 50.0 | 4.54e-01 | 90.7% | 83.9% |
| 4iedA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.62 | 50.0 | 3.22e-01 | 97.7% | 23.6% |
| 4q28A00 | 3.30.160.780 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.62 | 45.0 | 3.40e-01 | 79.1% | 54.5% |
| 1nigA00 | 1.20.1200.10 | Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like | 0.62 | 42.0 | 2.98e-01 | 72.1% | 25.3% |
| 2yfoA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.62 | 45.0 | 3.52e-01 | 79.1% | 55.2% |
| 1tk7A01 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.61 | 41.0 | 4.41e-01 | 72.1% | 91.9% |
| 3spdA00 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.60 | 47.0 | 3.17e-01 | 93.0% | 85.0% |
| 3k69A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 42.0 | 2.88e-01 | 100.0% | 21.3% |
| 1w36B03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 39.0 | 2.38e-01 | 72.1% | 9.7% |
| 2rsiA02 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.59 | 39.0 | 4.13e-01 | 76.7% | 96.6% |
| 1m6kA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.57 | 39.0 | 2.52e-01 | 74.4% | 99.2% |
| 6nhsA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.57 | 46.0 | 2.90e-01 | 93.0% | 68.2% |
| 2vrdA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.56 | 40.0 | 3.72e-01 | 93.0% | 59.0% |
| 2lo3A01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.55 | 36.0 | 3.62e-01 | 76.7% | 100.0% |
| 3mhsC02 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.55 | 36.0 | 4.02e-01 | 72.1% | 100.0% |
| 3vhtB02 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.54 | 38.0 | 3.82e-01 | 90.7% | 100.0% |
| 2ebnA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.54 | 39.0 | 2.46e-01 | 86.0% | 89.8% |
| 3w4rA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.54 | 44.0 | 2.73e-01 | 100.0% | 96.4% |
| 1b0uA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 45.0 | 2.84e-01 | 100.0% | 40.7% |
| 6nifA01 | 3.30.900.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain | 0.53 | 44.0 | 2.90e-01 | 100.0% | 24.5% |
| 1go4A00 | 3.30.900.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain | 0.52 | 45.0 | 2.95e-01 | 100.0% | 25.5% |
| 8d3mA02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.52 | 43.0 | 2.77e-01 | 97.7% | 47.5% |
| 7uclA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 45.0 | 3.45e-01 | 100.0% | 98.0% |
| 1yuiA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.52 | 35.0 | 3.36e-01 | 81.4% | 57.4% |
| 3sfvB02 | 6.10.140.2010 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 42.0 | 2.83e-01 | 100.0% | 29.5% |
| 3oqgA00 | 3.40.1440.50 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › | 0.50 | 39.0 | 2.76e-01 | 95.3% | 47.7% |
ECOD (55)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4459875 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.90 | 81.0 | 7.80e-01 | 100.0% | 89.8% |
| 3179779 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.88 | 79.0 | 6.12e-01 | 100.0% | 50.0% |
| 4474519 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.87 | 77.0 | 6.91e-01 | 100.0% | 71.7% |
| 3361215 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.86 | 75.0 | 6.77e-01 | 100.0% | 73.3% |
| 3830856 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.85 | 74.0 | 7.32e-01 | 97.7% | 93.3% |
| 4507628 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.85 | 71.0 | 7.05e-01 | 95.3% | 95.6% |
| 3649933 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.83 | 72.0 | 6.88e-01 | 97.7% | 84.0% |
| 3598119 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.79 | 68.0 | 5.86e-01 | 100.0% | 64.3% |
| 3260511 | 386.1.1.71 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 | 0.68 | 55.0 | 5.17e-01 | 100.0% | 74.5% |
| 3723305 | 3755.3.1.322 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › LUC7 | 0.68 | 53.0 | 3.64e-01 | 88.4% | 24.5% |
| 3814664 | 386.1.1.71 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 | 0.67 | 51.0 | 5.11e-01 | 100.0% | 84.4% |
| 3623892 | 150.1.1.109 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › LUC7 | 0.67 | 55.0 | 3.81e-01 | 97.7% | 61.3% |
| 4537295 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 45.0 | 4.84e-01 | 76.7% | 88.6% |
| 3324892 | 386.1.1.71 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 | 0.66 | 52.0 | 4.10e-01 | 95.3% | 40.8% |
| 3417508 | 376.1.3.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD | 0.66 | 46.0 | 4.42e-01 | 74.4% | 76.0% |
| 3396822 | 386.1.1.18 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_jaz | 0.65 | 51.0 | 4.98e-01 | 100.0% | 78.0% |
| 3564667 | 906.1.1.3 ↗ | few secondary structure elements › CCCH zinc finger › CCCH zinc finger › CCCH zinc finger › LUC7 | 0.65 | 48.0 | 3.94e-01 | 86.0% | 50.0% |
| 3400885 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.65 | 45.0 | 4.66e-01 | 97.7% | 91.4% |
| 3799151 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.65 | 50.0 | 3.29e-01 | 90.7% | 19.1% |
| 3471045 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.65 | 44.0 | 4.10e-01 | 83.7% | 53.3% |
| 3995179 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.64 | 51.0 | 5.11e-01 | 95.3% | 95.6% |
| 3922099 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.64 | 52.0 | 4.94e-01 | 100.0% | 80.0% |
| 3230733 | 376.1.2.24 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › RH_dom | 0.63 | 46.0 | 4.21e-01 | 86.0% | 58.3% |
| 3372756 | 3826.1.1.64 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › LUC7 | 0.63 | 52.0 | 3.42e-01 | 100.0% | 50.2% |
| 3720076 | 386.1.1.9 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-U1 | 0.63 | 47.0 | 4.26e-01 | 93.0% | 58.5% |
| 3390803 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.63 | 43.0 | 4.54e-01 | 83.7% | 91.4% |
| 3863430 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.62 | 45.0 | 4.11e-01 | 90.7% | 56.7% |
| 4306889 | 375.1.1.241 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_ACC | 0.62 | 42.0 | 4.46e-01 | 76.7% | 88.6% |
| 3866157 | 389.1.1.36 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › Ldl_recept_a | 0.62 | 40.0 | 4.00e-01 | 74.4% | 62.2% |
| 3194109 | 386.1.1.23 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_3 | 0.62 | 47.0 | 4.45e-01 | 88.4% | 69.1% |
| 3513803 | 377.1.1.92 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LUC7 | 0.62 | 46.0 | 3.96e-01 | 88.4% | 47.5% |
| None | — | 0.62 | 44.0 | 2.67e-01 | 88.4% | 10.3% | |
| 3548173 | 386.1.1.267 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C17orf113 | 0.61 | 49.0 | 4.35e-01 | 100.0% | 74.3% |
| 5071927 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.60 | 45.0 | 4.25e-01 | 83.7% | 67.3% |
| 3485130 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.58 | 42.0 | 4.37e-01 | 88.4% | 100.0% |
| 3600710 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 48.0 | 3.05e-01 | 100.0% | 88.6% |
| 3663614 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.56 | 38.0 | 3.78e-01 | 79.1% | 68.9% |
| 3742973 | 386.1.1.18 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_jaz | 0.56 | 40.0 | 3.82e-01 | 90.7% | 63.3% |
| 3669182 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.56 | 47.0 | 3.97e-01 | 95.3% | 80.6% |
| 3240415 | 386.1.1.23 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_3 | 0.55 | 39.0 | 4.11e-01 | 90.7% | 100.0% |
| 3597829 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.54 | 38.0 | 3.83e-01 | 83.7% | 75.6% |
| 5021644 | 2003.1.3.10 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › FAD_oxidored | 0.54 | 44.0 | 3.00e-01 | 100.0% | 95.6% |
| 3678060 | 632.2.1.26 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › PF31066 | 0.54 | 40.0 | 3.51e-01 | 88.4% | 90.7% |
| 3608727 | 386.1.1.57 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › TRAFD1-XIAF1_ZnF | 0.54 | 35.0 | 3.54e-01 | 79.1% | 62.2% |
| 3471309 | 386.1.1.241 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › C2H2-zf_KIN17 | 0.54 | 38.0 | 3.91e-01 | 90.7% | 95.0% |
| 3741604 | 611.1.1.1 ↗ | alpha bundles › N-cbl like › Transferrin receptor ectodomain, C-terminal domain › Transferrin receptor ectodomain, C-terminal domain › TFR_dimer | 0.53 | 43.0 | 3.10e-01 | 100.0% | 28.2% |
| 3537747 | 386.1.1.71 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 | 0.53 | 43.0 | 4.06e-01 | 95.3% | 74.5% |
| 3211264 | 386.1.1.51 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › CEP104_ZnF | 0.53 | 42.0 | 3.35e-01 | 95.3% | 83.2% |
| 3885120 | 386.1.1.51 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › CEP104_ZnF | 0.52 | 42.0 | 3.62e-01 | 95.3% | 85.3% |
| 160872 | 386.1.1.57 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › TRAFD1-XIAF1_ZnF | 0.52 | 38.0 | 3.37e-01 | 88.4% | 60.0% |
| 3902439 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.52 | 38.0 | 3.84e-01 | 90.7% | 82.2% |
| 5010276 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.52 | 43.0 | 3.14e-01 | 100.0% | 99.2% |
| 3213610 | 3525.1.1.0 ↗ | alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain | 0.51 | 40.0 | 3.68e-01 | 93.0% | 95.0% |
| 3222487 | 386.1.1.20 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met | 0.51 | 36.0 | 3.67e-01 | 88.4% | 86.7% |
| 3271642 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.50 | 34.0 | 3.58e-01 | 79.1% | 100.0% |