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IMGVR_UViG_3300013099_000017-3300013099-Ga0164315_10000001215

Arc-Vir

IMGVR_UViG_3300013099_000017-3300013099-Ga0164315_10000001215

Quality

84.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-57
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1cf7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 47.0 4.14e-01 96.3% 54.9%
4yzrA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.53 47.0 2.81e-01 100.0% 14.2%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4102879 604.12.1.76 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › IspA 0.59 44.0 3.83e-01 85.2% 53.8%
3168797 5001.1.1.190 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › NPR3 0.56 50.0 4.08e-01 100.0% 89.9%
3938010 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.55 42.0 3.24e-01 88.9% 84.3%
4261673 7527.1.1.2 a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › CoA_transf_3 0.54 46.0 2.79e-01 98.1% 19.8%
4060903 2007.1.14.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Ferrochelatase 0.54 44.0 2.76e-01 94.4% 20.9%
3639694 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 45.0 2.81e-01 100.0% 16.6%
D2 high residues 59-117
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gl5A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.73 58.0 4.45e-01 86.4% 85.7%
1h2iA01 3.30.390.80 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 0.72 54.0 4.04e-01 81.4% 53.4%
2ymsC00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.70 40.0 3.68e-01 74.6% 44.0%
1vlaA01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.68 41.0 4.69e-01 84.7% 85.7%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.65 50.0 4.31e-01 84.7% 94.8%
4dnuA00 2.130.10.30 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II 0.65 47.0 2.85e-01 76.3% 97.3%
1ml8A01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.64 35.0 4.30e-01 84.7% 94.1%
2jmbA00 2.40.128.290 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein family Atu4866 0.63 40.0 3.70e-01 96.6% 48.1%
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.63 47.0 3.63e-01 94.9% 37.3%
3hr8A02 3.30.250.10 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain 0.63 40.0 3.69e-01 72.9% 49.3%
4g7nA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.61 48.0 3.82e-01 86.4% 59.5%
2j8gA03 2.20.120.10 Mainly Beta › Single Sheet › Multimodular pneumococcal cell wall endolysin, domain 3 › Multimodular pneumococcal cell wall endolysin, domain 3 0.61 43.0 4.38e-01 96.6% 77.6%
4okeA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.61 43.0 3.20e-01 76.3% 48.1%
2auwA01 3.30.2020.10 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › NE0471-like N-terminal domain 0.60 46.0 4.17e-01 84.7% 92.7%
1xksA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 49.0 3.11e-01 100.0% 31.0%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.57 46.0 3.61e-01 94.9% 43.2%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.57 39.0 3.56e-01 72.9% 59.5%
3kk7A01 3.30.420.400 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.56 42.0 3.56e-01 84.7% 53.2%
5fmgA00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.56 47.0 3.24e-01 96.6% 27.4%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 42.0 3.68e-01 98.3% 53.9%
3pnnA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.56 42.0 2.82e-01 89.8% 59.8%
4geqB00 3.30.160.430 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 39.0 4.01e-01 76.3% 77.6%
3e9mB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 37.0 2.70e-01 74.6% 97.5%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 44.0 3.24e-01 94.9% 35.6%
2bmxB01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 44.0 3.30e-01 100.0% 77.9%
3vz9B00 3.30.457.50 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 0.53 45.0 3.85e-01 100.0% 60.2%
4tvcA01 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.53 37.0 2.70e-01 76.3% 42.0%
3dg6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 42.0 3.58e-01 96.6% 77.2%
2lioA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 46.0 3.52e-01 100.0% 49.3%
4p79A00 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.52 39.0 2.75e-01 79.7% 64.1%
4gnxA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 41.0 3.47e-01 96.6% 50.0%
2wdoA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.51 44.0 3.55e-01 100.0% 56.1%
4i8oA01 3.30.310.240 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Bacterial toxin RNase RnlA/LsoA, N-terminal domain 0.51 44.0 3.86e-01 96.6% 69.7%
2w18A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 42.0 2.76e-01 100.0% 35.6%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.51 39.0 2.99e-01 88.1% 70.6%
7nitA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 34.0 2.83e-01 71.2% 53.9%
1aroP05 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.51 43.0 3.01e-01 100.0% 34.9%
2h1eA02 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 34.0 3.49e-01 81.4% 74.5%
4bjzA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 40.0 3.11e-01 100.0% 92.3%
1tuoA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.50 39.0 3.82e-01 96.6% 76.9%
2pm6D01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 40.0 2.75e-01 100.0% 27.5%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.50 40.0 3.29e-01 100.0% 54.8%
8cukB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 39.0 2.59e-01 96.6% 50.9%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4069377 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.84 60.0 4.99e-01 74.6% 97.9%
4055381 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.83 59.0 4.97e-01 74.6% 96.8%
4609775 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.80 58.0 4.93e-01 78.0% 95.8%
5009324 218.4.1.1 a+b two layers › Enolase-N/ribosomal protein › Dhaf4260 N-terminal domain › Dhaf4260 N-terminal domain › DUF4213 0.74 55.0 4.98e-01 79.7% 83.7%
4038272 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.74 52.0 4.35e-01 72.9% 95.8%
4426619 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.72 54.0 4.61e-01 81.4% 97.9%
4065841 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.71 54.0 4.61e-01 81.4% 95.8%
4297175 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.71 54.0 4.74e-01 83.1% 97.8%
4072334 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.69 49.0 4.12e-01 74.6% 98.0%
3784980 719.2.1.1 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.66 51.0 4.24e-01 84.7% 86.7%
3537919 719.2.1.1 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.63 49.0 4.29e-01 84.7% 97.8%
4033330 2484.1.1.86 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TerL_nuclease 0.62 47.0 3.21e-01 83.1% 65.1%
4512566 2.1.1.60 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N 0.61 41.0 4.45e-01 83.1% 91.1%
3265851 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.60 33.0 3.80e-01 71.2% 75.0%
3741445 241.4.1.0 a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 0.59 44.0 3.68e-01 79.7% 58.0%
3487368 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.59 34.0 3.29e-01 79.7% 52.3%
2323952 4.29.1.1 beta barrels › SH3 › Pyrrolysyl-tRNA synthetase tRNA binding domain › Pyrrolysyl-tRNA synthetase tRNA binding domain › PF31240 0.58 39.0 3.42e-01 78.0% 47.7%
4614224 2.1.1.60 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N 0.58 38.0 4.07e-01 84.7% 82.0%
3967108 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.57 36.0 4.01e-01 81.4% 92.5%
4379144 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.57 48.0 4.22e-01 100.0% 75.8%
3627455 3906.1.1.1 extended segments › Mitoribosomal protein mL52 › Mitoribosomal protein mL52 › Mitoribosomal protein mL52 › MRPL52 0.57 34.0 3.25e-01 78.0% 48.6%
3742310 5.1.4.38 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.56 47.0 3.09e-01 100.0% 36.7%
3335794 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 48.0 3.29e-01 100.0% 71.9%
3807532 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 48.0 2.86e-01 100.0% 36.9%
4384294 2.1.1.60 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N 0.56 35.0 3.98e-01 71.2% 95.0%
3309658 5.1.4.44 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1_2 0.56 46.0 2.95e-01 98.3% 32.1%
4280539 109.21.1.8 alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › WD40 0.55 46.0 2.63e-01 100.0% 14.8%
4024970 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.55 46.0 2.81e-01 100.0% 30.2%
3300848 4.1.1.38 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.55 33.0 2.82e-01 76.3% 35.0%
3263649 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 44.0 3.42e-01 96.6% 40.0%
3230584 2.1.1.318 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF7037 0.55 37.0 3.92e-01 79.7% 86.0%
3591236 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 45.0 2.60e-01 98.3% 31.1%
4059525 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.54 45.0 3.96e-01 100.0% 70.5%
4622872 5.1.3.154 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF30361 0.53 46.0 2.83e-01 96.6% 31.2%
4255589 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.53 44.0 3.82e-01 100.0% 73.0%
4413603 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.52 41.0 3.69e-01 100.0% 69.0%
3260066 1129.1.1.1 a+b three layers › Mitochondrial complex I, B17.2 subunit › Mitochondrial complex I, B17.2 subunit › Mitochondrial complex I, B17.2 subunit › NDUFA12 0.52 37.0 3.13e-01 76.3% 67.0%
4566718 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.52 42.0 3.84e-01 100.0% 73.3%
5014724 295.1.1.51 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › FtsQ_DivIB_C 0.51 40.0 3.38e-01 84.7% 52.0%
4019781 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 42.0 2.85e-01 100.0% 45.4%
3926511 5.1.5.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › CNH 0.51 42.0 2.78e-01 100.0% 24.4%
2482315 2.1.1.60 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N 0.50 37.0 3.90e-01 88.1% 92.5%
3603146 2008.1.1.95 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DpnII 0.50 38.0 2.42e-01 81.4% 53.0%
4313114 378.1.1.30 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › PF30178 0.50 39.0 3.24e-01 91.5% 68.3%
4014861 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 41.0 2.87e-01 100.0% 42.4%
3895142 5.1.3.216 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_HPS5 0.50 42.0 3.03e-01 98.3% 37.9%
4952379 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.50 41.0 2.70e-01 91.5% 45.3%