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IMGVR_UViG_3300013099_000017-3300013099-Ga0164315_1000000195

Arc-Vir

IMGVR_UViG_3300013099_000017-3300013099-Ga0164315_1000000195

Quality

91.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-53
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xtfA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.84 58.0 3.31e-01 100.0% 8.4%
3thxB04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.81 66.0 4.79e-01 88.0% 35.2%
2x8nA01 3.30.2020.40 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 0.79 57.0 4.46e-01 76.0% 76.3%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.76 59.0 4.66e-01 86.0% 45.2%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.74 49.0 3.73e-01 70.0% 30.5%
7kfuC02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.73 52.0 3.28e-01 100.0% 15.9%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.73 59.0 4.35e-01 92.0% 37.1%
3k8rA01 3.30.2020.40 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 0.71 48.0 4.28e-01 70.0% 89.7%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.70 58.0 4.24e-01 94.0% 34.6%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 46.0 4.22e-01 70.0% 55.2%
4n9jA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.69 53.0 4.13e-01 98.0% 39.3%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 48.0 3.72e-01 76.0% 82.4%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.67 45.0 4.05e-01 72.0% 62.0%
4flnA02 3.20.190.20 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › 0.66 49.0 3.47e-01 80.0% 36.2%
2ch5B02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.66 52.0 3.44e-01 86.0% 36.0%
4geqB00 3.30.160.430 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.66 44.0 4.26e-01 70.0% 62.1%
1oe8A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.66 44.0 3.91e-01 72.0% 98.8%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.66 50.0 4.08e-01 84.0% 43.3%
1wgeA00 3.10.660.10 Alpha Beta › Roll › Microbial ribonuclease fold › DPH Zinc finger 0.65 43.0 3.74e-01 70.0% 54.2%
4p79A00 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.65 55.0 3.72e-01 94.0% 81.2%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.64 41.0 4.19e-01 70.0% 66.0%
7d8gA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.63 46.0 3.17e-01 98.0% 23.4%
3cnwA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.63 48.0 3.41e-01 82.0% 100.0%
2bwnB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.62 44.0 3.13e-01 76.0% 84.9%
3uoxB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 51.0 3.21e-01 92.0% 70.2%
2zdiC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 57.0 3.96e-01 100.0% 79.1%
4wfsA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.61 49.0 3.31e-01 96.0% 48.2%
2rghA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 50.0 3.24e-01 94.0% 70.3%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 42.0 3.08e-01 74.0% 49.3%
6y48D01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 51.0 3.16e-01 94.0% 29.2%
4csqA00 2.30.29.190 Mainly Beta › Roll › PH-domain like › 0.60 40.0 3.14e-01 84.0% 31.0%
4g7nA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.59 50.0 3.98e-01 100.0% 48.5%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.58 47.0 3.35e-01 94.0% 48.5%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 38.0 3.50e-01 72.0% 47.1%
3vz9B00 3.30.457.50 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 0.57 44.0 3.42e-01 82.0% 44.7%
2uz8A01 3.40.30.90 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.57 38.0 3.76e-01 72.0% 64.8%
7c9rH01 3.90.50.10 Alpha Beta › Alpha-Beta Complex › Photosynthetic Reaction Center; Chain H, domain 2 › Photosynthetic Reaction Center, subunit H, domain 2 0.56 40.0 2.98e-01 78.0% 85.8%
4fhdA02 3.80.30.30 Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme › 0.56 45.0 2.92e-01 88.0% 27.3%
1d8cA03 1.20.1220.12 Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Malate synthase, domain III 0.56 41.0 3.15e-01 84.0% 34.1%
3exmA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.55 50.0 3.29e-01 98.0% 62.6%
1vhzA01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.55 40.0 2.73e-01 78.0% 65.7%
4gf0A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 37.0 3.01e-01 70.0% 72.6%
5suvC00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.53 42.0 3.13e-01 86.0% 62.4%
1h2iA01 3.30.390.80 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 0.53 45.0 3.27e-01 98.0% 41.9%
1c0gA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.52 36.0 2.99e-01 72.0% 54.3%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 35.0 3.35e-01 72.0% 96.8%
3pijA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.50 43.0 2.54e-01 94.0% 86.1%
5xukA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.50 42.0 3.13e-01 90.0% 62.6%
5xuhA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.50 44.0 3.20e-01 94.0% 63.2%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3779830 4.1.1.304 beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.88 51.0 4.10e-01 84.0% 33.3%
5014724 295.1.1.51 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › FtsQ_DivIB_C 0.82 65.0 5.18e-01 92.0% 44.0%
4027091 375.3.1.2 few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-CSL 0.81 51.0 4.96e-01 70.0% 58.2%
4679970 101.35.1.5 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.81 61.0 4.69e-01 80.0% 66.7%
1179510 719.2.1.2 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › DUF2442 0.79 57.0 4.62e-01 76.0% 85.1%
3611219 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.78 54.0 3.14e-01 72.0% 29.1%
4201648 375.3.1.2 few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-CSL 0.77 52.0 4.91e-01 70.0% 74.6%
3242234 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.77 50.0 2.86e-01 70.0% 6.5%
4033043 616.1.1.41 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Terminase_4 0.76 50.0 4.05e-01 78.0% 37.8%
3979431 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.75 54.0 3.77e-01 76.0% 60.0%
3403184 719.2.1.1 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.74 52.0 4.11e-01 74.0% 39.0%
3403990 719.2.1.1 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.73 51.0 4.05e-01 74.0% 36.9%
4025072 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.73 58.0 4.42e-01 90.0% 38.3%
3177048 719.2.1.0 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like 0.72 50.0 4.07e-01 74.0% 37.9%
3700076 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.72 53.0 3.07e-01 96.0% 9.1%
5075725 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.71 53.0 3.74e-01 100.0% 27.6%
3547409 604.1.1.153 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF4455 0.71 59.0 3.85e-01 100.0% 22.5%
3247824 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 61.0 4.80e-01 98.0% 88.6%
3971397 719.2.1.1 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.68 52.0 4.20e-01 82.0% 45.2%
3174658 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.68 50.0 4.07e-01 78.0% 57.8%
2507513 210.1.2.1 a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase 0.68 47.0 3.12e-01 74.0% 18.2%
3994170 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 50.0 3.34e-01 82.0% 51.8%
4948490 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 45.0 3.92e-01 70.0% 61.3%
3396958 719.2.1.1 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.66 50.0 4.05e-01 84.0% 42.0%
3930660 719.2.1.1 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.66 50.0 3.96e-01 80.0% 40.8%
4940177 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 44.0 4.00e-01 70.0% 54.3%
3497972 1021.1.1.0 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.64 52.0 4.51e-01 98.0% 57.6%
3936608 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 49.0 3.86e-01 86.0% 40.9%
4940157 4.6.1.0 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.63 42.0 4.13e-01 70.0% 69.1%
3497478 868.1.1.3 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 0.63 54.0 3.47e-01 92.0% 33.5%
3581826 284.2.1.1 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain › Glyco_hydro_18 0.63 42.0 3.81e-01 70.0% 75.7%
3623960 3105.1.1.4 a+b three layers › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › MOLO1 0.63 47.0 3.33e-01 84.0% 24.7%
3940429 2002.1.1.30 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.62 43.0 2.63e-01 74.0% 20.0%
3300051 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.60 40.0 3.56e-01 70.0% 44.0%
3601275 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 46.0 2.76e-01 100.0% 10.6%
3475462 4.1.1.304 beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.60 53.0 4.39e-01 96.0% 100.0%
5049640 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 40.0 3.52e-01 72.0% 60.8%
3609527 2006.1.1.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF 0.59 48.0 3.32e-01 100.0% 94.3%
4494129 880.1.1.1 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.59 46.0 2.61e-01 84.0% 13.5%
3914367 5.1.2.44 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Beta-prop_HPS5 0.58 46.0 3.39e-01 90.0% 77.7%
3585623 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.58 40.0 3.01e-01 74.0% 81.5%
4985007 7581.1.1.6 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_C 0.58 40.0 2.85e-01 72.0% 25.2%
3912274 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.58 51.0 4.50e-01 96.0% 97.1%
3366119 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 39.0 2.58e-01 74.0% 16.0%
4399722 1013.1.1.2 beta duplicates or obligate multimers › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › WD40 0.57 49.0 2.87e-01 100.0% 77.1%
3660244 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.57 43.0 3.80e-01 86.0% 53.3%
4024411 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 35.0 3.43e-01 72.0% 56.4%
3480592 252.1.1.0 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.55 40.0 3.79e-01 78.0% 71.7%
5077602 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.55 44.0 2.85e-01 98.0% 97.4%
3915542 331.23.1.4 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF100_C 0.55 39.0 3.33e-01 76.0% 61.3%
4195918 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 40.0 2.68e-01 88.0% 51.0%
3595133 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 42.0 2.67e-01 98.0% 52.5%
3334474 7581.1.1.25 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › FAE1_CUT1_RppA, ACP_syn_III_C 0.52 39.0 2.63e-01 86.0% 39.1%
3706786 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 38.0 3.34e-01 80.0% 96.0%