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IMGVR_UViG_3300013103_000024-3300013103-Ga0164318_100002052
Arc-VirIMGVR_UViG_3300013103_000024-3300013103-Ga0164318_100002052
Identity
- Kingdom:
- archaea
Quality
75.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-51
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vx7000 | 2.30.170.20 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 | 0.86 | 70.0 | 6.26e-01 | 100.0% | 64.5% |
| 1vq8U00 | 2.30.170.20 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 | 0.78 | 61.0 | 5.84e-01 | 100.0% | 75.5% |
| 2innB00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.76 | 69.0 | 3.83e-01 | 100.0% | 9.5% |
| 3o58V00 | 2.30.170.20 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 | 0.73 | 59.0 | 5.45e-01 | 100.0% | 71.2% |
| 4r2qA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.72 | 48.0 | 3.84e-01 | 81.8% | 35.2% |
| 3j7aZ00 | 3.30.1230.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 | 0.71 | 59.0 | 5.16e-01 | 100.0% | 77.8% |
| 2cqpA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.70 | 47.0 | 3.73e-01 | 72.7% | 66.3% |
| 2cjsC01 | 3.30.60.120 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.68 | 51.0 | 5.35e-01 | 88.6% | 94.7% |
| 2efpA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.67 | 49.0 | 3.88e-01 | 81.8% | 69.4% |
| 6njeA00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.66 | 45.0 | 2.79e-01 | 75.0% | 19.9% |
| 1g0hA02 | 3.40.190.80 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › | 0.65 | 57.0 | 4.18e-01 | 100.0% | 63.5% |
| 4pcqA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.58 | 50.0 | 4.11e-01 | 100.0% | 83.3% |
| 2qz8A02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.58 | 48.0 | 4.06e-01 | 100.0% | 80.2% |
| 2aw4Z00 | 4.10.830.30 | Few Secondary Structures › Irregular › 30s Ribosomal Protein S14; Chain N › Ribosomal protein L31 | 0.56 | 44.0 | 4.00e-01 | 100.0% | 84.3% |
| 4hqeA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 40.0 | 3.11e-01 | 79.5% | 58.1% |
| 3fh1A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 36.0 | 2.76e-01 | 70.5% | 24.6% |
| 2gqqA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.55 | 39.0 | 3.32e-01 | 81.8% | 80.0% |
| 5dymA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 38.0 | 3.07e-01 | 79.5% | 70.8% |
| 5h20A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 37.0 | 2.97e-01 | 79.5% | 62.1% |
| 3zmdA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 37.0 | 2.66e-01 | 79.5% | 40.5% |
| 1bm9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 36.0 | 2.80e-01 | 77.3% | 57.5% |
| 1x0cA01 | 2.60.350.10 | Mainly Beta › Sandwich › Dex49a from penicillium minioluteum complex, domain 1 › Dextranase, N-terminal | 0.51 | 40.0 | 2.87e-01 | 100.0% | 50.9% |
| 6h9xA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.51 | 41.0 | 2.54e-01 | 100.0% | 87.1% |
| 2omlA01 | 3.30.70.580 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, N-terminal subdomain | 0.50 | 39.0 | 3.46e-01 | 93.2% | 81.1% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5068785 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.91 | 71.0 | 7.37e-01 | 100.0% | 92.5% |
| 4943801 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.87 | 69.0 | 7.19e-01 | 100.0% | 95.0% |
| 3528204 | 377.1.1.16 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS | 0.85 | 65.0 | 6.82e-01 | 100.0% | 92.5% |
| 4932487 | 377.1.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e | 0.84 | 69.0 | 5.90e-01 | 100.0% | 57.1% |
| 3537096 | 377.1.1.16 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS | 0.84 | 65.0 | 6.79e-01 | 100.0% | 92.5% |
| 3416712 | 377.9.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like | 0.84 | 63.0 | 6.63e-01 | 97.7% | 90.0% |
| 3806997 | 376.1.2.16 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1-like_CT | 0.82 | 73.0 | 6.09e-01 | 100.0% | 68.0% |
| 3714738 | 377.1.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e | 0.82 | 72.0 | 5.24e-01 | 100.0% | 36.7% |
| 3611182 | 377.1.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e | 0.82 | 72.0 | 5.93e-01 | 100.0% | 55.0% |
| 3372361 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.79 | 61.0 | 6.38e-01 | 95.5% | 92.5% |
| 3394526 | 377.1.1.16 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS | 0.79 | 66.0 | 6.64e-01 | 100.0% | 93.3% |
| 3977489 | 377.1.1.117 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › PF27493 | 0.77 | 67.0 | 6.51e-01 | 100.0% | 96.0% |
| 4938674 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.74 | 65.0 | 5.91e-01 | 100.0% | 81.7% |
| 3834127 | 377.1.1.47 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › C1-like_CT | 0.74 | 58.0 | 5.49e-01 | 90.9% | 76.4% |
| 3934269 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.73 | 54.0 | 5.64e-01 | 81.8% | 92.5% |
| 5053880 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.72 | 60.0 | 5.96e-01 | 93.2% | 91.1% |
| 3416461 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.71 | 57.0 | 5.91e-01 | 93.2% | 100.0% |
| 3787894 | 70.3.1.1 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SET | 0.68 | 59.0 | 3.48e-01 | 100.0% | 12.3% |
| 3849360 | 376.1.3.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RIM2a_ZnF | 0.68 | 56.0 | 4.83e-01 | 97.7% | 65.3% |
| 3703254 | 376.1.3.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE | 0.67 | 57.0 | 4.77e-01 | 100.0% | 55.0% |
| 3804567 | 376.1.2.16 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1-like_CT | 0.66 | 58.0 | 4.82e-01 | 100.0% | 55.0% |
| 4965229 | 377.1.1.133 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › DUF7569 | 0.66 | 55.0 | 5.37e-01 | 100.0% | 88.0% |
| 3567692 | 376.1.3.85 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › Znf_SCAND3 | 0.65 | 50.0 | 4.88e-01 | 88.6% | 78.0% |
| 3199487 | 377.4.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › YlxR-like › YlxR-like | 0.64 | 53.0 | 4.76e-01 | 97.7% | 86.2% |
| 3599415 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.60 | 47.0 | 4.20e-01 | 97.7% | 60.0% |
| 4957834 | 101.1.2.920 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_TbsP_C | 0.59 | 41.0 | 3.12e-01 | 77.3% | 50.8% |
| 4976807 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.57 | 41.0 | 3.06e-01 | 79.5% | 47.2% |
| 5046461 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.56 | 41.0 | 2.70e-01 | 79.5% | 34.0% |
| 3537441 | 376.1.1.19 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RINGv | 0.56 | 48.0 | 3.50e-01 | 100.0% | 44.8% |
| 3535703 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.56 | 45.0 | 3.63e-01 | 100.0% | 63.0% |
| 3861130 | 376.1.1.19 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RINGv | 0.56 | 47.0 | 3.88e-01 | 100.0% | 65.9% |
| 3698858 | 376.1.1.19 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RINGv | 0.55 | 46.0 | 4.23e-01 | 100.0% | 81.7% |
| 4666309 | 101.1.21.0 ↗ | alpha arrays › HTH › HTH › HTH in T7 RNA polymerase | 0.54 | 38.0 | 2.52e-01 | 81.8% | 42.6% |
| 5073620 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.53 | 36.0 | 3.42e-01 | 79.5% | 69.2% |
| 4943526 | 101.1.2.18 ↗ | alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S19e | 0.53 | 38.0 | 2.77e-01 | 84.1% | 50.0% |
| 5010819 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 37.0 | 2.74e-01 | 81.8% | 42.0% |
| 3488211 | 387.1.1.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related | 0.52 | 38.0 | 3.17e-01 | 81.8% | 45.6% |
| 4928753 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 38.0 | 3.01e-01 | 79.5% | 80.0% |
| 4928248 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 36.0 | 2.77e-01 | 79.5% | 45.4% |
| 5033134 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 40.0 | 4.01e-01 | 86.4% | 84.4% |
| 3254281 | 3241.1.1.1 ↗ | alpha arrays › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › GPP34 | 0.51 | 40.0 | 2.64e-01 | 100.0% | 98.8% |
| 5061948 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.50 | 35.0 | 2.62e-01 | 79.5% | 50.0% |
| 3999328 | 376.1.1.19 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RINGv | 0.50 | 40.0 | 3.68e-01 | 100.0% | 81.5% |