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IMGVR_UViG_3300013103_000024-3300013103-Ga0164318_1000020530

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300013103_000024-3300013103-Ga0164318_1000020530 ↗
Kingdom:: archaea

Quality

61.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 652-736

PDB

D2 high residues 746-880

PDB

D3 medium residues 1-157

PDB

D4 medium residues 205-338

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2cdqA02	1.20.120.1320	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartokinase, catalytic domain	0.52	36.0	4.06e-01	100.0%	97.9%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4541590	140.1.1.5 ↗	alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1	0.50	36.0	3.41e-01	73.9%	80.6%

D5 medium residues 339-398

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3euhC02	1.10.10.2260	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MukE-like family, C-terminal domain	0.56	37.0	3.05e-01	95.0%	36.1%
3ir4A01	3.40.30.10	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin	0.54	36.0	3.41e-01	70.0%	53.8%
1zbdB00	3.30.40.10	Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger)	0.54	41.0	3.36e-01	83.3%	51.2%
1pzwA00	3.40.1800.20	Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold ›	0.54	40.0	3.66e-01	80.0%	82.5%
1twfB05	3.90.1070.20	Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 ›	0.51	38.0	3.50e-01	83.3%	64.6%
2lfvA00	3.30.70.1070	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat	0.51	37.0	3.18e-01	80.0%	74.5%
5eriA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.50	39.0	3.03e-01	90.0%	66.7%

ECOD (21)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3689283	376.1.1.37 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C	0.62	43.0	3.74e-01	83.3%	47.3%
3264177	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.62	33.0	3.04e-01	90.0%	40.0%
4354093	376.1.1.37 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C	0.61	43.0	3.79e-01	83.3%	50.0%
3207695	377.1.1.0 ↗	few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like	0.58	35.0	3.82e-01	73.3%	72.0%
4822624	3532.1.1.1 ↗	alpha arrays › RNA-binding domain of telomerase › RNA-binding domain of telomerase › RNA-binding domain of telomerase › Telomerase_RBD	0.57	35.0	2.55e-01	83.3%	19.3%
3743792	377.1.1.4 ↗	few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › GATA	0.57	35.0	3.09e-01	75.0%	38.9%
4957686	101.1.2.78 ↗	alpha arrays › HTH › HTH › winged helix domain › AlkZ-like	0.55	38.0	3.54e-01	73.3%	75.0%
4977157	377.1.1.0 ↗	few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like	0.55	34.0	3.73e-01	73.3%	82.2%
3414477	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.55	37.0	3.91e-01	71.7%	85.5%
3871063	383.1.1.9 ↗	few secondary structure elements › Defensin-like › Defensin-related › Defensin-related › Defensin_beta_2	0.55	40.0	4.05e-01	80.0%	81.0%
3785596	216.1.1.2 ↗	a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C	0.54	36.0	2.72e-01	71.7%	46.1%
4974340	101.1.9.16 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17	0.54	31.0	3.29e-01	80.0%	63.6%
3704775	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.52	40.0	3.27e-01	83.3%	86.4%
5012881	304.7.1.0 ↗	a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors	0.51	33.0	3.18e-01	80.0%	55.7%
3581484	3767.1.1.2 ↗	a+b two layers › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain › Dicer_platform	0.51	36.0	2.60e-01	73.3%	69.2%
3697156	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.51	34.0	3.05e-01	71.7%	45.6%
3787871	109.4.1.44 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps35	0.51	40.0	2.41e-01	95.0%	32.5%
3778247	101.1.2.381 ↗	alpha arrays › HTH › HTH › winged helix domain › UBR1-like_wing	0.51	31.0	2.72e-01	81.7%	35.0%
5070516	1.1.3.0 ↗	beta barrels › cradle loop barrel › RIFT-related › AbrB	0.51	36.0	3.60e-01	73.3%	96.7%
2755329	3253.1.1.0 ↗	a+b two layers › ferredoxin-like domain in flagellar biosynthesis protein flhA › ferredoxin-like domain in flagellar biosynthesis protein flhA › ferredoxin-like domain in flagellar biosynthesis protein flhA	0.51	30.0	3.26e-01	80.0%	70.0%
3846283	377.1.1.0 ↗	few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like	0.50	35.0	3.70e-01	75.0%	96.0%