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IMGVR_UViG_3300013103_000024-3300013103-Ga0164318_1000020532
Arc-VirIMGVR_UViG_3300013103_000024-3300013103-Ga0164318_1000020532
Identity
- Kingdom:
- archaea
Quality
83.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-72
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4apmA01 | 3.50.4.10 | Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor | 0.61 | 46.0 | 4.12e-01 | 97.1% | 56.3% |
| 1f94A00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.57 | 45.0 | 4.73e-01 | 92.8% | 95.2% |
| 2gupA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.56 | 34.0 | 3.15e-01 | 97.1% | 43.3% |
| 3vk6A01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.56 | 38.0 | 4.08e-01 | 72.5% | 100.0% |
| 2o0yB02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.56 | 39.0 | 2.94e-01 | 100.0% | 28.8% |
| 2ed8A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 40.0 | 3.78e-01 | 81.2% | 62.8% |
| 2h41A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 40.0 | 3.65e-01 | 76.8% | 91.6% |
| 3obfA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.55 | 39.0 | 2.95e-01 | 100.0% | 29.5% |
| 2hg6A00 | 3.90.1650.10 | Alpha Beta › Alpha-Beta Complex › PA1123-like › PA1123-like | 0.55 | 35.0 | 3.11e-01 | 73.9% | 42.5% |
| 4dmiA02 | 2.60.120.1010 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 38.0 | 3.12e-01 | 73.9% | 70.1% |
| 3kuzB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 35.0 | 3.02e-01 | 81.2% | 42.2% |
| 2ii3A01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.54 | 47.0 | 3.30e-01 | 100.0% | 30.4% |
| 1a0iA01 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.54 | 40.0 | 3.82e-01 | 81.2% | 68.7% |
| 6rxpA02 | 3.30.1600.10 | Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' | 0.53 | 34.0 | 3.08e-01 | 81.2% | 46.3% |
| 2gnrA01 | 6.10.30.10 | Special › Helix non-globular › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › | 0.53 | 32.0 | 3.22e-01 | 100.0% | 58.0% |
| 1ak2A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 45.0 | 3.16e-01 | 95.7% | 96.8% |
| 4am6A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 44.0 | 3.15e-01 | 100.0% | 31.4% |
| 4czwA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.52 | 35.0 | 2.20e-01 | 100.0% | 12.2% |
| 1e3hA01 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.52 | 39.0 | 2.80e-01 | 85.5% | 44.8% |
| 2w91A03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 37.0 | 3.38e-01 | 79.7% | 85.4% |
| 1xkpB00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.51 | 45.0 | 3.78e-01 | 98.6% | 78.5% |
| 2m4vA00 | 2.20.28.270 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A | 0.51 | 34.0 | 3.33e-01 | 78.3% | 60.0% |
| 2d93A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 40.0 | 3.22e-01 | 85.5% | 75.4% |
| 2yhoE00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.50 | 37.0 | 3.74e-01 | 82.6% | 78.6% |
| 3hlbD00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.50 | 38.0 | 2.42e-01 | 82.6% | 82.2% |
| 3uh0A01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.50 | 37.0 | 2.54e-01 | 82.6% | 55.4% |
| 2xy1A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 37.0 | 3.36e-01 | 79.7% | 66.0% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3993649 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.61 | 41.0 | 3.57e-01 | 89.9% | 48.0% |
| 5042394 | 896.1.1.0 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related | 0.60 | 45.0 | 4.01e-01 | 79.7% | 90.5% |
| 3240213 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.57 | 40.0 | 4.03e-01 | 78.3% | 74.3% |
| 3412246 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.57 | 41.0 | 3.75e-01 | 79.7% | 56.8% |
| 3838696 | 210.2.1.3 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C_2 | 0.56 | 44.0 | 3.07e-01 | 84.1% | 33.3% |
| 3432805 | 390.1.1.6 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_2 | 0.56 | 39.0 | 3.63e-01 | 79.7% | 56.7% |
| 3425211 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.56 | 40.0 | 3.71e-01 | 79.7% | 58.9% |
| 5070290 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.56 | 41.0 | 3.45e-01 | 79.7% | 56.8% |
| 3440136 | 390.1.1.6 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_2 | 0.55 | 39.0 | 3.64e-01 | 81.2% | 57.8% |
| 4000318 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.55 | 36.0 | 3.89e-01 | 71.0% | 78.3% |
| 3308189 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.55 | 40.0 | 3.74e-01 | 78.3% | 62.4% |
| 3938079 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.55 | 41.0 | 3.74e-01 | 79.7% | 66.7% |
| 3299586 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.54 | 37.0 | 4.12e-01 | 72.5% | 100.0% |
| 4034419 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.54 | 39.0 | 2.85e-01 | 78.3% | 39.0% |
| 3933883 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.54 | 40.0 | 3.84e-01 | 79.7% | 70.0% |
| 3334247 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 39.0 | 3.40e-01 | 100.0% | 50.0% |
| 3924676 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.53 | 39.0 | 3.52e-01 | 79.7% | 56.8% |
| 3795857 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.52 | 40.0 | 3.75e-01 | 81.2% | 68.7% |
| 3864210 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.52 | 38.0 | 2.33e-01 | 82.6% | 29.5% |
| 3842044 | 11.1.1.108 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 | 0.51 | 37.0 | 3.15e-01 | 78.3% | 50.8% |
| 4120506 | 243.11.1.4 ↗ | a+b two layers › Cystatin-like › NP_346341.1 protein › NP_346341.1 protein › PF29632 | 0.51 | 39.0 | 3.82e-01 | 87.0% | 90.0% |
| 3481757 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.51 | 35.0 | 3.89e-01 | 73.9% | 100.0% |
| 3258564 | 11.1.1.801 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7035 | 0.51 | 38.0 | 3.05e-01 | 81.2% | 62.8% |
| 3581088 | 3945.1.1.0 ↗ | alpha superhelices › N-terminal fragment of dynein heavy chain › N-terminal fragment of dynein heavy chain › N-terminal fragment of dynein heavy chain | 0.51 | 42.0 | 3.30e-01 | 91.3% | 51.0% |
| 3571066 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.51 | 40.0 | 4.06e-01 | 94.2% | 90.0% |
| 4083039 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 37.0 | 3.24e-01 | 81.2% | 61.7% |
| 3262558 | 11.1.1.801 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7035 | 0.50 | 37.0 | 3.02e-01 | 82.6% | 47.3% |
| 3992651 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.50 | 38.0 | 3.55e-01 | 81.2% | 68.2% |
| 3853833 | 304.9.1.81 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RBD_AKAP-17A | 0.50 | 38.0 | 2.96e-01 | 84.1% | 67.9% |
| 4189243 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.50 | 38.0 | 3.17e-01 | 82.6% | 48.5% |
| 3819108 | 11.1.1.912 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28397 | 0.50 | 36.0 | 2.88e-01 | 78.3% | 53.5% |
| 4287081 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.50 | 38.0 | 3.18e-01 | 82.6% | 51.2% |