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IMGVR_UViG_3300013103_000024-3300013103-Ga0164318_1000020548

Arc-Vir

IMGVR_UViG_3300013103_000024-3300013103-Ga0164318_1000020548

Quality

78.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-128
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kzsA02 6.10.140.1870 Special › Helix non-globular › Helix Hairpins › 0.68 24.0 3.10e-01 81.0% 52.9%
3ajfA00 1.20.1440.190 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tenuivirus movement protein 0.66 37.0 4.05e-01 92.2% 67.4%
4rayA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 44.0 4.98e-01 71.6% 98.8%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.62 43.0 4.69e-01 83.6% 85.6%
1px5A02 1.10.1410.20 Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › 2'-5'-oligoadenylate synthetase 1, domain 2 0.58 41.0 3.51e-01 72.4% 79.0%
5c0yA02 1.10.150.80 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain 0.58 38.0 4.17e-01 78.4% 83.9%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 38.0 4.24e-01 70.7% 89.9%
3zq7A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 39.0 4.12e-01 71.6% 100.0%
1ku9B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 39.0 4.38e-01 73.3% 98.9%
3tixA02 6.10.140.1690 Special › Helix non-globular › Helix Hairpins › 0.56 27.0 3.12e-01 85.3% 63.3%
6yigA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.55 29.0 3.22e-01 71.6% 62.5%
2fbiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 3.97e-01 81.9% 69.1%
5u8kA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 39.0 4.01e-01 73.3% 92.5%
2w96A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 37.0 3.73e-01 75.9% 70.8%
1r7jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 35.0 3.91e-01 79.3% 85.6%
6pcoC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 39.0 3.76e-01 78.4% 67.4%
1wkbA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.52 32.0 3.20e-01 98.3% 57.9%
5jazA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.52 29.0 3.21e-01 94.0% 68.1%
5jbrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 4.06e-01 75.0% 98.8%
4krdB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.52 44.0 3.88e-01 100.0% 95.3%
4ociA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 29.0 3.46e-01 74.1% 86.3%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5012661 101.1.2.650 alpha arrays › HTH › HTH › winged helix domain › DUF7343 0.64 41.0 4.88e-01 70.7% 100.0%
5002248 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.62 45.0 4.54e-01 76.7% 76.7%
5027661 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.61 44.0 4.48e-01 75.0% 78.3%
4142759 101.1.2.762 alpha arrays › HTH › HTH › winged helix domain › PF25863 0.61 46.0 4.84e-01 79.3% 100.0%
4950756 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 41.0 4.58e-01 71.6% 96.5%
5035853 101.1.2.222 alpha arrays › HTH › HTH › winged helix domain › PH0730-like_N 0.59 43.0 4.59e-01 76.7% 93.0%
5005238 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.59 52.0 3.60e-01 100.0% 54.5%
5054826 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.59 42.0 4.64e-01 75.0% 96.7%
4979047 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 42.0 3.79e-01 81.0% 54.5%
3889562 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 33.0 3.44e-01 93.1% 59.1%
4993666 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.57 39.0 4.00e-01 79.3% 72.2%
3352605 108.1.1.96 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.57 39.0 3.99e-01 71.6% 96.5%
3600895 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 39.0 3.88e-01 70.7% 100.0%
3812674 101.1.2.165 alpha arrays › HTH › HTH › winged helix domain › ORC_WH_C 0.56 39.0 3.72e-01 70.7% 97.0%
3798156 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.56 46.0 3.96e-01 94.0% 90.5%
4942548 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 38.0 3.50e-01 74.1% 54.7%
3703267 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.54 40.0 4.00e-01 78.4% 75.0%
3786964 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.54 43.0 3.82e-01 89.7% 89.7%
3948495 102.2.1.11 alpha arrays › HhH/H2TH › H2TH › H2TH › PF27202 0.53 40.0 3.92e-01 78.4% 72.8%
3370898 108.1.1.101 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_7, EF-hand_8 0.53 37.0 2.85e-01 71.6% 92.1%
3310900 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.52 36.0 3.68e-01 71.6% 96.5%
1822527 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.52 37.0 3.44e-01 75.0% 57.0%
3688775 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 36.0 3.08e-01 72.4% 85.9%
4001630 108.1.1.98 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 0.51 38.0 3.88e-01 81.0% 80.9%
3290673 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.51 38.0 3.69e-01 81.0% 70.4%
3331642 5000.3.1.8 alpha arrays › Toxins' membrane translocation domains › Bcl-2 inhibitors of programmed cell death › Bcl-2 inhibitors of programmed cell death › SPARK 0.51 37.0 3.19e-01 75.0% 55.1%
3469981 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.50 42.0 3.86e-01 90.5% 88.0%
D2 high residues 151-293
PDB
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8aasC01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.79 43.0 5.09e-01 87.4% 75.5%
2k5vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.74 48.0 5.66e-01 86.7% 94.9%
2rcnA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.74 33.0 4.94e-01 98.6% 100.0%
1nnxA00 2.40.50.200 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Bacterial OB-fold 0.72 43.0 5.34e-01 88.8% 92.5%
3nqiA01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.71 34.0 4.88e-01 79.7% 100.0%
3qwnD01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.70 35.0 4.90e-01 89.5% 98.6%
1k3rA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 30.0 4.57e-01 84.6% 98.3%
2pi2D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 44.0 4.75e-01 87.4% 76.4%
4b08A01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 36.0 4.77e-01 86.0% 93.8%
1fguB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 48.0 5.15e-01 88.8% 84.7%
3u4vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 51.0 5.61e-01 100.0% 96.6%
4gnxB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 44.0 4.77e-01 100.0% 81.1%
2cwaA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 39.0 4.47e-01 80.4% 81.7%
2vqeL00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 36.0 3.89e-01 83.9% 65.3%
1jt8A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 33.0 3.83e-01 89.5% 73.5%
3kf6A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 44.0 4.50e-01 88.8% 77.9%
6jy5B00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.60 33.0 4.22e-01 77.6% 93.9%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 24.0 3.42e-01 83.9% 80.6%
4joiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 42.0 4.28e-01 100.0% 80.1%
7k98B01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 35.0 3.90e-01 77.6% 82.5%
1kxlA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 44.0 3.96e-01 88.8% 72.7%
3mxnB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 37.0 3.88e-01 90.9% 81.7%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3255514 2.1.1.80 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.84 71.0 6.69e-01 88.8% 98.8%
3481495 2.1.1.80 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.83 70.0 6.60e-01 88.8% 99.4%
4966537 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.82 68.0 6.56e-01 86.7% 98.1%
3547167 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.78 66.0 6.20e-01 88.8% 99.4%
2988967 2.1.1.80 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.78 64.0 6.14e-01 86.7% 99.4%
4982792 2.1.1.80 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.76 63.0 6.06e-01 87.4% 100.0%
4220178 2.1.1.228 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_bind 0.72 66.0 5.60e-01 100.0% 94.0%
3253622 148.1.3.213 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_bind 0.72 67.0 5.72e-01 100.0% 93.2%
5056791 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 40.0 5.37e-01 80.4% 100.0%
3777997 2004.1.1.296 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM_bind 0.72 66.0 5.60e-01 100.0% 99.1%
1736300 2.1.1.80 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.72 59.0 5.62e-01 87.4% 98.2%
3918508 148.1.3.213 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_bind 0.70 65.0 5.52e-01 100.0% 97.8%
5000724 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 42.0 5.17e-01 77.6% 91.6%
4164108 2.1.1.18 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.69 33.0 4.54e-01 80.4% 94.1%
4567919 2.1.1.224 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29084 0.68 41.0 4.69e-01 89.5% 78.2%
4099166 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.68 46.0 5.17e-01 87.4% 88.2%
3792503 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 63.0 5.58e-01 100.0% 98.0%
4030549 2.1.1.228 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_bind 0.65 60.0 5.40e-01 100.0% 97.9%
4323154 2.1.1.341 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30208 0.64 40.0 4.44e-01 87.4% 78.3%
5076884 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 45.0 4.54e-01 88.8% 73.1%
5010892 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.60 36.0 4.18e-01 81.8% 81.0%
3743386 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 39.0 3.57e-01 88.1% 51.4%
3840116 2.1.1.172 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNR_OB1_NT 0.59 34.0 3.91e-01 89.5% 76.2%
5039349 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 22.0 3.10e-01 77.6% 75.0%
3829075 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 43.0 4.21e-01 81.8% 93.8%
3878186 2.1.1.69 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RMI2 0.53 41.0 4.17e-01 100.0% 82.7%
D3 high residues 665-718
PDB
Domain cluster: representative
CATH (65)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kxpA01 3.30.1140.60 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit 0.79 59.0 4.78e-01 100.0% 42.1%
3fbzA01 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 66.0 5.49e-01 100.0% 59.8%
3s64A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.77 67.0 5.92e-01 100.0% 71.6%
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 67.0 5.89e-01 100.0% 73.2%
3dteA02 1.10.10.1030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IrrE, HTH domain 0.77 55.0 6.04e-01 92.6% 100.0%
1txuA01 1.10.246.120 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.75 65.0 5.49e-01 100.0% 70.2%
4akrA01 3.30.1140.60 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit 0.75 57.0 4.60e-01 100.0% 42.5%
4ap2B01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.73 59.0 4.50e-01 92.6% 56.0%
3c24A02 1.10.3640.10 Mainly Alpha › Orthogonal Bundle › putative oxidoreductase fold › Semialdehyde dehydrogenase-like, C-terminal 0.73 49.0 4.04e-01 70.4% 39.0%
4xaxB02 1.20.58.1290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain 0.73 61.0 5.05e-01 94.4% 96.0%
7ccmB01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.73 62.0 4.66e-01 100.0% 44.8%
3n4eA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.72 62.0 5.05e-01 98.1% 51.0%
3lpzA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.71 61.0 3.82e-01 100.0% 17.9%
1f20A01 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.71 63.0 4.48e-01 100.0% 33.7%
4dqlA03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.70 60.0 4.25e-01 96.3% 32.9%
3b9qA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.68 56.0 4.71e-01 92.6% 53.9%
2keyA00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.68 61.0 4.77e-01 100.0% 49.1%
1psyA01 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.68 59.0 4.87e-01 100.0% 82.0%
3o2pE00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 57.0 5.03e-01 100.0% 65.1%
1y7oB00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.67 49.0 3.47e-01 88.9% 24.2%
3nkyA03 1.20.960.20 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › 0.67 50.0 4.57e-01 90.7% 60.3%
1rykA00 1.10.1470.10 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ 0.67 56.0 5.12e-01 94.4% 71.0%
2lahA00 1.25.40.430 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.66 55.0 4.00e-01 96.3% 40.0%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.64 53.0 4.13e-01 100.0% 42.9%
2wy4A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.64 56.0 4.18e-01 100.0% 85.6%
3vokA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.63 50.0 3.64e-01 100.0% 29.5%
3ckdA02 1.20.58.360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines 0.62 50.0 3.92e-01 94.4% 86.3%
1lshA02 1.25.10.20 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Vitellinogen, superhelical 0.61 47.0 2.93e-01 100.0% 14.0%
2yn7A00 1.10.3160.10 Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 0.61 43.0 2.94e-01 77.8% 19.2%
2c0kB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.61 52.0 3.88e-01 100.0% 89.3%
2qffA00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.60 40.0 3.60e-01 92.6% 50.0%
2o7tA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.60 50.0 3.58e-01 100.0% 52.4%
4pxoA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 49.0 3.80e-01 96.3% 87.8%
6ictA01 3.90.1410.10 Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 1 › set domain protein methyltransferase, domain 1 0.59 52.0 3.26e-01 100.0% 36.4%
2aamC00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.59 50.0 3.16e-01 94.4% 20.6%
2d2sA01 1.20.58.1210 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, N-terminal helical domain 0.59 47.0 3.71e-01 94.4% 41.4%
4adnA01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.59 51.0 4.46e-01 100.0% 76.5%
1q2lA04 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.59 49.0 3.32e-01 100.0% 51.3%
3fp3A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 41.0 3.20e-01 81.5% 31.1%
2ewfA02 1.20.1270.310 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.58 42.0 3.70e-01 77.8% 53.1%
3cx5A02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.58 49.0 3.34e-01 98.1% 66.4%
3nkzA00 1.20.58.380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. 0.58 44.0 3.69e-01 83.3% 71.1%
1aj3A00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 42.0 3.69e-01 88.9% 84.7%
1bgfA00 1.10.532.10 Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain 0.57 46.0 3.72e-01 100.0% 66.1%
4u04B01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 40.0 3.53e-01 83.3% 47.7%
1b48A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 45.0 3.67e-01 90.7% 69.7%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.56 43.0 3.52e-01 88.9% 65.8%
4c9bB00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 45.0 3.00e-01 100.0% 83.8%
5djsA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 42.0 3.18e-01 87.0% 51.0%
3ehmA03 1.20.120.840 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SusD-like, tetratrico peptide repeats domain 0.55 41.0 3.36e-01 87.0% 97.5%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 44.0 4.24e-01 100.0% 79.1%
4a25B01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.55 42.0 2.99e-01 83.3% 54.0%
3qc1A01 1.25.40.540 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TAP42-like family 0.55 42.0 3.07e-01 83.3% 45.7%
2l3lA01 1.20.58.1250 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain 0.54 44.0 3.72e-01 100.0% 63.2%
3oxfA05 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 44.0 4.01e-01 90.7% 72.0%
2i0mA02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.54 43.0 3.64e-01 94.4% 80.2%
2gomA00 1.10.10.1270 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV 0.54 41.0 4.00e-01 100.0% 75.4%
6a7hA01 1.20.140.180 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.54 46.0 3.54e-01 100.0% 43.9%
1q5nA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.53 48.0 4.18e-01 100.0% 87.7%
2ctqA01 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.52 44.0 3.77e-01 100.0% 58.5%
7odyC01 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.52 40.0 3.46e-01 88.9% 73.9%
2a9uA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.52 38.0 3.15e-01 88.9% 50.0%
2fbnA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 39.0 3.00e-01 90.7% 40.5%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.51 44.0 4.34e-01 100.0% 94.7%
2c5iT00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 44.0 3.74e-01 100.0% 81.9%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995680 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.87 80.0 7.68e-01 100.0% 90.0%
3952621 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.85 76.0 7.02e-01 100.0% 82.6%
4094359 4030.1.1.0 alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz 0.83 65.0 6.71e-01 98.1% 92.0%
4180109 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.82 72.0 6.13e-01 100.0% 70.0%
4287075 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.79 69.0 5.86e-01 100.0% 70.0%
4428577 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.79 70.0 5.70e-01 100.0% 64.0%
5001690 3276.1.1.0 alpha arrays › N-terminal domain in MogR repressor › N-terminal domain in MogR repressor › N-terminal domain in MogR repressor 0.79 68.0 6.27e-01 96.3% 75.7%
4933155 198.1.1.27 alpha arrays › Saposin-like › Saposin-like › Saposin-like › PF27234 0.79 69.0 5.98e-01 100.0% 63.5%
147354 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.77 67.0 5.92e-01 100.0% 71.6%
2096499 3273.1.1.2 alpha arrays › Filamentous archaeal viruses coat proteins › Filamentous archaeal viruses coat proteins › Filamentous archaeal viruses coat proteins › MCP_C 0.77 67.0 5.89e-01 100.0% 73.2%
4983680 7064.1.1.0 alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 0.76 64.0 4.76e-01 94.4% 90.6%
4250716 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.76 65.0 5.51e-01 100.0% 66.3%
3563871 603.1.1.121 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF30821 0.76 64.0 5.07e-01 98.1% 75.7%
1792251 3616.1.1.2 alpha bundles › ExoU toxin middle helical domain › ExoU toxin middle helical domain › ExoU toxin middle helical domain › VipD-like_C 0.75 64.0 4.77e-01 100.0% 60.3%
4118464 4030.1.1.1 alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › F_actin_cap_B 0.75 64.0 6.42e-01 96.3% 94.5%
4116078 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.74 63.0 5.73e-01 100.0% 88.0%
4937529 103.9.1.0 alpha arrays › RuvA-C › RanGAP2 N-terminal domain › RanGAP2 N-terminal domain 0.74 59.0 4.88e-01 90.7% 61.0%
4928737 592.2.1.0 alpha arrays › PWI domain-like › YugE-like › YugE-like 0.73 64.0 5.34e-01 100.0% 78.9%
4123602 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.72 60.0 5.23e-01 100.0% 70.0%
4452821 101.1.2.604 alpha arrays › HTH › HTH › winged helix domain › SGIII 0.71 59.0 5.38e-01 96.3% 69.3%
3623710 3277.2.1.1 alpha arrays › Thymine dioxygenase JBP1 DNA-binding domain-like › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › CHD1-like_C 0.71 59.0 4.85e-01 98.1% 57.1%
5002758 4030.1.1.0 alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz 0.70 57.0 5.61e-01 94.4% 86.7%
3952595 223.1.1.23 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 0.70 60.0 4.24e-01 100.0% 90.0%
4983838 592.2.1.0 alpha arrays › PWI domain-like › YugE-like › YugE-like 0.69 59.0 4.84e-01 96.3% 61.0%
3172982 101.8.1.2 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.69 59.0 4.29e-01 100.0% 42.5%
4929489 101.1.2.897 alpha arrays › HTH › HTH › winged helix domain › Zn_ribbon_2 0.68 58.0 5.54e-01 100.0% 100.0%
3301750 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 58.0 4.77e-01 100.0% 57.1%
3432597 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.68 56.0 4.61e-01 100.0% 49.5%
3438949 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.68 55.0 3.41e-01 92.6% 16.4%
3169602 387.1.6.2 few secondary structure elements › omega toxin-like › omega toxin-related › Conotoxin Mo3964 › Sin3a_C 0.66 55.0 3.58e-01 100.0% 37.8%
4017461 3860.1.1.0 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.65 55.0 4.58e-01 98.1% 59.0%
3520887 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 56.0 3.89e-01 100.0% 30.0%
4978525 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.63 43.0 2.81e-01 72.2% 35.3%
3996345 3615.1.1.0 alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain 0.63 53.0 3.90e-01 100.0% 40.9%
5066519 650.1.1.0 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.61 50.0 4.98e-01 100.0% 94.5%
5050395 601.28.1.0 alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.61 49.0 4.34e-01 92.6% 90.4%
4808037 3838.1.1.3 alpha arrays › SidM Rab1-activation domain › SidM Rab1-activation domain › SidM Rab1-activation domain › SidM_N 0.60 44.0 3.37e-01 79.6% 80.6%
3715812 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 49.0 3.45e-01 100.0% 30.2%
4826095 5067.1.1.5 alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Sterol-sensing 0.59 47.0 4.02e-01 92.6% 89.2%
3583162 2498.1.1.3 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M2 0.58 48.0 3.36e-01 100.0% 30.2%
4181805 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.57 46.0 4.20e-01 94.4% 71.8%
3241028 101.1.2.649 alpha arrays › HTH › HTH › winged helix domain › PF28730 0.57 47.0 4.16e-01 98.1% 64.7%
3417036 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 45.0 3.13e-01 100.0% 27.2%
3988566 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.57 40.0 3.72e-01 77.8% 58.6%
3477472 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 47.0 3.88e-01 100.0% 60.9%
3716553 109.27.1.0 alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain 0.56 38.0 3.79e-01 100.0% 66.7%
4061821 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.56 44.0 4.01e-01 94.4% 65.0%
5029911 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.55 45.0 4.47e-01 94.4% 91.5%
None 0.55 46.0 3.18e-01 100.0% 51.8%
3601089 650.1.1.0 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.52 42.0 3.79e-01 96.3% 65.0%
4466455 109.4.1.337 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ipi1_N 0.52 42.0 2.67e-01 94.4% 15.6%
3598474 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 44.0 3.12e-01 96.3% 53.5%