Back to structures

IMGVR_UViG_3300013103_000050-3300013103-Ga0164318_100006802

Arc-Vir

IMGVR_UViG_3300013103_000050-3300013103-Ga0164318_100006802

Quality

87.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 147-242
PDB
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zvuA03 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.64 43.0 3.83e-01 86.5% 47.9%
3teqB00 1.10.287.3550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 38.0 3.76e-01 71.9% 62.4%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.57 34.0 3.84e-01 81.2% 76.0%
2id3A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 43.0 3.80e-01 82.3% 63.4%
1evsA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.52 38.0 3.26e-01 84.4% 46.6%
3beeA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.50 35.0 3.61e-01 96.9% 76.9%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3203026 3640.1.1.8 alpha duplicates or obligate multimers › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Tri-helical 0.64 46.0 4.68e-01 76.0% 86.3%
3783024 192.4.1.0 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.63 39.0 3.72e-01 72.9% 52.7%
3605666 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 42.0 4.04e-01 91.7% 72.7%
4412223 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 46.0 3.56e-01 96.9% 61.3%
3945219 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.53 39.0 3.78e-01 78.1% 80.9%
1144728 604.12.1.2 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 0.53 38.0 3.90e-01 92.7% 77.7%
3462100 604.1.1.102 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF8324 0.53 36.0 3.40e-01 70.8% 60.0%
3695505 604.3.1.11 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF155 0.51 37.0 3.56e-01 78.1% 86.1%
4034237 5055.1.1.0 extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel 0.50 34.0 3.29e-01 85.4% 58.3%
3691300 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.50 34.0 3.79e-01 82.3% 90.7%
D2 medium residues 15-126
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7phiA01 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.51 30.0 3.04e-01 88.4% 57.3%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3959582 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.54 34.0 3.47e-01 92.0% 62.6%
4989889 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.50 27.0 2.67e-01 75.9% 44.0%
3231106 226.1.1.4 a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.50 31.0 2.84e-01 88.4% 46.2%