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IMGVR_UViG_3300013103_000050-3300013103-Ga0164318_100006803

Arc-Vir

IMGVR_UViG_3300013103_000050-3300013103-Ga0164318_100006803

Quality

78.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-59
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2az0B00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.88 62.0 5.56e-01 81.1% 54.9%
2rkhA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.80 57.0 4.99e-01 81.1% 52.6%
1jwjA01 3.90.340.10 Alpha Beta › Alpha-Beta Complex › Nitric Oxide Synthase; Chain A, domain 1 › Nitric Oxide Synthase; Chain A, domain 1 0.79 57.0 3.98e-01 77.4% 24.3%
2efkA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.79 63.0 3.92e-01 88.7% 17.2%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.79 60.0 5.20e-01 81.1% 57.0%
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 59.0 5.08e-01 83.0% 52.4%
1ij5A01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 61.0 5.32e-01 83.0% 86.8%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.73 66.0 5.88e-01 100.0% 75.7%
1j78A05 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.73 56.0 5.44e-01 84.9% 76.7%
6cgaC02 1.20.58.860 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 63.0 5.46e-01 96.2% 83.3%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.70 64.0 5.34e-01 100.0% 78.4%
6jpaE00 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.69 62.0 4.30e-01 100.0% 60.9%
1dmhA00 2.60.130.10 Mainly Beta › Sandwich › Protocatechuate 3,4-Dioxygenase, subunit A › Aromatic compound dioxygenase 0.68 51.0 3.21e-01 83.0% 14.2%
1zv1A00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.68 52.0 5.00e-01 83.0% 72.9%
1ya0A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.68 60.0 3.95e-01 96.2% 27.2%
4q5nA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.67 55.0 4.30e-01 90.6% 43.8%
1gt0D00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.67 47.0 4.16e-01 79.2% 50.6%
2guzB00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.63 49.0 4.62e-01 86.8% 69.2%
7ymiZ01 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.62 49.0 4.81e-01 86.8% 79.3%
2da7A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 42.0 3.81e-01 73.6% 53.5%
2co9A00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.59 47.0 3.97e-01 94.3% 70.6%
1qguB04 1.20.89.10 Mainly Alpha › Up-down Bundle › Nitrogenase Molybdenum-iron Protein, subunit B; domain 4 › Nitrogenase Molybdenum-iron Protein, subunit B, domain 4 0.59 48.0 4.25e-01 96.2% 79.5%
7a0hA01 3.30.1140.60 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit 0.58 40.0 3.30e-01 75.5% 37.6%
2lpeA01 6.10.140.1120 Special › Helix non-globular › Helix Hairpins › 0.53 45.0 3.99e-01 96.2% 65.4%
3rpmA02 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.52 46.0 3.94e-01 100.0% 69.4%
8b6jF01 1.10.287.20 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain 0.51 43.0 4.04e-01 100.0% 83.6%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1877692 6026.1.1.1 alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 0.89 67.0 7.00e-01 79.2% 87.5%
3794529 148.1.3.193 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › TRAP-gamma 0.83 74.0 5.25e-01 100.0% 34.2%
2984622 3396.1.1.1 extended segments › HIG1 domain family member 1A › HIG1 domain family member 1A › HIG1 domain family member 1A › HIG_1_N 0.82 71.0 6.58e-01 100.0% 75.4%
4977784 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.80 65.0 4.16e-01 96.2% 20.0%
3738042 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.79 62.0 5.64e-01 84.9% 65.7%
3807750 186.2.1.1 alpha arrays › lambda integrase-N-like › VEFS domain › VEFS domain › VEFS-Box 0.79 57.0 4.32e-01 77.4% 32.8%
3967290 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.79 64.0 5.72e-01 100.0% 64.3%
3285723 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.79 60.0 4.08e-01 83.0% 24.6%
2323907 212.1.1.24 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 0.78 63.0 4.04e-01 86.8% 22.0%
3544505 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.78 58.0 6.18e-01 79.2% 93.3%
3902100 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.78 63.0 5.29e-01 86.8% 58.8%
3855461 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.78 63.0 5.27e-01 86.8% 58.8%
3556027 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.78 62.0 5.26e-01 86.8% 58.8%
3316616 632.2.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.77 53.0 5.27e-01 71.7% 69.1%
3905118 4207.1.1.11 alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › Mis14 0.77 64.0 5.25e-01 94.3% 51.0%
3685214 632.18.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 0.77 69.0 5.88e-01 100.0% 67.1%
5038847 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.76 62.0 5.53e-01 88.7% 64.3%
3805159 4099.1.1.11 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med14 0.76 67.0 5.33e-01 96.2% 52.0%
3705583 3928.1.1.0 alpha bundles › Cell division protein CrgA › Cell division protein CrgA › Cell division protein CrgA 0.75 69.0 6.23e-01 100.0% 80.0%
3700089 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.75 63.0 5.85e-01 98.1% 73.8%
3641718 604.5.1.52 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › DUF7610 0.75 60.0 5.12e-01 88.7% 56.2%
3598977 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.75 64.0 5.58e-01 100.0% 71.8%
3491418 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.74 64.0 5.62e-01 96.2% 65.3%
5020110 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.72 56.0 4.66e-01 88.7% 49.0%
5044480 7566.1.1.2 a/b three-layered sandwiches › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain › GTP-bdg_N 0.72 59.0 4.04e-01 88.7% 27.2%
3489407 148.1.1.4 alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.70 63.0 5.45e-01 100.0% 67.5%
3193842 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.69 62.0 4.69e-01 100.0% 76.8%
4525456 864.1.1.2 a+b two layers › DLC › DLC › DLC › Tctex-1 0.69 47.0 3.80e-01 73.6% 34.8%
4838801 3710.1.1.1 alpha bundles › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › CHD5 0.69 61.0 5.68e-01 96.2% 87.7%
5017845 632.7.1.67 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › YetF_N 0.69 58.0 5.04e-01 96.2% 74.1%
3456443 2003.1.5.30 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_7 0.68 54.0 3.38e-01 86.8% 35.1%
4283243 2004.1.1.149 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SecA_DEAD 0.67 59.0 3.55e-01 96.2% 16.8%
3989824 192.1.1.0 alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain 0.67 53.0 5.44e-01 88.7% 88.0%
4941496 2484.1.1.124 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.67 59.0 3.94e-01 100.0% 27.3%
3412019 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.66 61.0 5.01e-01 100.0% 92.2%
4945270 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 50.0 3.59e-01 92.5% 32.9%
3438234 509.1.1.0 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.61 42.0 4.03e-01 73.6% 63.1%
3660913 3826.1.1.0 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.58 48.0 4.14e-01 96.2% 73.3%
D2 high residues 73-142
PDB
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fo8D02 2.40.10.380 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.82 76.0 6.89e-01 100.0% 92.3%
2fnqA01 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.65 56.0 4.85e-01 100.0% 75.2%
3dclA02 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 46.0 4.24e-01 88.6% 78.0%
7vljA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.57 39.0 3.60e-01 71.4% 89.2%
2wq4A01 2.60.120.760 Mainly Beta › Sandwich › Jelly Rolls › 0.55 46.0 3.93e-01 100.0% 61.2%
3lifB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 37.0 2.96e-01 70.0% 52.1%
7uzsX04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 45.0 4.17e-01 100.0% 77.1%
2dp9A01 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.54 37.0 3.37e-01 72.9% 79.0%
2jz4A01 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.52 36.0 2.96e-01 77.1% 35.1%
6qe7A01 3.90.182.10 Alpha Beta › Alpha-Beta Complex › Toxin - Anthrax Protective Antigen; domain 1 › Toxin - Anthrax Protective Antigen;domain 1 0.52 43.0 3.59e-01 98.6% 66.2%
2ztbA02 2.60.40.4280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 42.0 3.85e-01 100.0% 67.7%
1j4sA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.51 35.0 2.87e-01 78.6% 34.2%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
358963 10.19.1.1 beta sandwiches › jelly-roll › Domain I of tail sheath protein Gp18 › Domain I of tail sheath protein Gp18 › Gp18_dom_I 0.82 76.0 6.51e-01 100.0% 79.2%
2095488 3629.1.1.0 beta sandwiches › Tail sheath protein beta-sandwich domain › Tail sheath protein beta-sandwich domain › Tail sheath protein beta-sandwich domain 0.82 74.0 6.79e-01 98.6% 92.2%
5076995 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.65 49.0 4.73e-01 87.1% 72.5%
4080130 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.63 48.0 4.78e-01 87.1% 78.7%
3784272 1.1.7.102 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF28793 0.61 47.0 4.02e-01 85.7% 78.3%
1557491 10.32.1.1 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Laminin_B 0.59 49.0 3.78e-01 100.0% 59.5%
3337981 2484.1.1.176 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_1+Hexokinase_2 0.59 44.0 2.84e-01 82.9% 83.9%
4947671 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 43.0 4.22e-01 82.9% 77.5%
5039643 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 44.0 3.81e-01 87.1% 67.5%
1281033 1.1.7.33 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF4438 0.57 46.0 3.59e-01 90.0% 45.6%
3421621 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 47.0 3.72e-01 100.0% 68.6%
4602602 1.1.7.19 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.56 43.0 3.68e-01 85.7% 58.3%
3461759 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 46.0 3.78e-01 100.0% 74.0%
3482202 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.55 37.0 4.04e-01 75.7% 89.1%
3513652 11.1.1.427 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › AP3B1_C 0.53 44.0 3.84e-01 100.0% 86.7%
4985499 206.1.3.21 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.53 43.0 3.27e-01 97.1% 63.5%
3740583 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.52 42.0 3.48e-01 100.0% 85.3%
3719860 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 39.0 3.39e-01 84.3% 74.8%
5019022 206.1.3.21 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.51 42.0 2.98e-01 95.7% 48.6%
5046855 206.1.3.21 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.51 41.0 3.10e-01 94.3% 61.1%
3471771 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 36.0 3.96e-01 75.7% 98.2%
3536626 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.50 42.0 3.14e-01 100.0% 55.7%