Back to structures

IMGVR_UViG_3300013103_001684-3300013103-Ga0164318_100098847

Arc-Vir

IMGVR_UViG_3300013103_001684-3300013103-Ga0164318_100098847

Quality

94.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-140
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00133.29 best tRNA-synt_1 166.6 1.10e-48 97.8% 32.4%
PF09334.18 tRNA-synt_1g 42.5 5.20e-11 71.7% 16.4%
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ileA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.94 90.0 6.05e-01 100.0% 31.7%
1pg2A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.92 62.0 4.46e-01 82.6% 27.5%
1li5B01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.91 55.0 4.36e-01 82.6% 33.2%
3sp1A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.91 57.0 4.39e-01 82.6% 32.6%
1ffyA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.90 83.0 5.66e-01 100.0% 32.2%
1obhA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.89 61.0 4.58e-01 82.6% 31.7%
2csxA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.86 59.0 4.90e-01 83.3% 43.0%
1gaxA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.85 73.0 5.30e-01 91.3% 36.4%
1iq0A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.81 65.0 4.64e-01 83.3% 37.9%
3fnrA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.76 62.0 4.66e-01 84.8% 46.7%
1wkbA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.76 71.0 4.85e-01 100.0% 33.6%
1irxA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.74 57.0 4.78e-01 82.6% 49.1%
3c8zA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.74 64.0 4.74e-01 94.2% 39.6%
5jldA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.72 56.0 4.63e-01 81.2% 56.3%
2f9sB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.71 37.0 3.82e-01 81.9% 50.7%
2l5oA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.70 38.0 3.74e-01 84.1% 48.7%
2q3fA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 43.0 3.90e-01 82.6% 50.3%
1t9hA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 36.0 3.57e-01 82.6% 51.4%
1m6eX02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 38.0 3.27e-01 81.9% 36.9%
2oerA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 43.0 3.91e-01 74.6% 62.6%
1vizA00 3.20.20.390 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › FMN-linked oxidoreductases 0.59 37.0 3.14e-01 81.9% 38.2%
8a26A01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.54 41.0 3.30e-01 83.3% 39.9%
3t5tA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.53 33.0 3.05e-01 84.1% 44.7%
1gqiA03 3.90.1330.10 Alpha Beta › Alpha-Beta Complex › Alpha-d-glucuronidase, C-terminal Domain › Alpha-glucuronidase, C-terminal domain 0.53 38.0 3.20e-01 74.6% 71.7%
5hvmA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.52 34.0 2.99e-01 81.9% 42.3%
1kqpA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 39.0 3.10e-01 76.8% 85.6%
1b5tA00 3.20.20.220 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.52 45.0 3.60e-01 93.5% 94.2%
4gc3A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.52 40.0 3.27e-01 81.9% 47.1%
3mbdA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 43.0 3.30e-01 90.6% 80.4%
7zveA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 35.0 3.16e-01 81.9% 51.1%
3mcnB02 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.51 40.0 3.30e-01 87.7% 47.5%
3inpA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.50 32.0 2.81e-01 81.2% 40.8%
7y11A01 3.40.525.10 Alpha Beta › 3-Layer(aba) Sandwich › Phosphatidylinositol Transfer Protein Sec14p › CRAL-TRIO lipid binding domain 0.50 37.0 3.27e-01 84.8% 52.5%
2yxoB00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.50 39.0 3.17e-01 82.6% 50.2%
ECOD (100)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4966286 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.98 95.0 6.45e-01 100.0% 33.7%
4570776 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.97 95.0 6.64e-01 100.0% 38.3%
3752156 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.97 94.0 8.07e-01 100.0% 69.0%
4943328 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.97 94.0 6.56e-01 100.0% 37.6%
4609529 2005.1.1.40 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g 0.96 81.0 5.87e-01 100.0% 36.6%
5014982 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.96 81.0 5.56e-01 100.0% 30.1%
4422873 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.96 94.0 6.62e-01 100.0% 39.4%
3281867 2005.1.1.40 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g 0.96 93.0 6.36e-01 100.0% 36.0%
4974610 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.96 93.0 6.40e-01 100.0% 34.9%
3497002 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.96 93.0 6.51e-01 100.0% 37.3%
5031489 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.96 93.0 6.28e-01 100.0% 33.6%
4158181 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.96 93.0 6.29e-01 100.0% 33.8%
3598046 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.96 93.0 6.62e-01 100.0% 40.0%
5055078 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.96 93.0 6.14e-01 100.0% 30.2%
4669770 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.96 93.0 6.46e-01 100.0% 36.8%
4029573 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.96 93.0 5.84e-01 100.0% 24.0%
None 0.95 92.0 5.76e-01 100.0% 23.0%
4994381 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.95 92.0 6.53e-01 100.0% 39.4%
4369642 2005.1.1.40 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g 0.95 92.0 6.30e-01 100.0% 34.5%
4234481 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.95 81.0 5.67e-01 100.0% 32.7%
4336729 2005.1.1.40 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g 0.95 89.0 6.53e-01 100.0% 42.9%
4562825 2005.1.1.40 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g 0.95 78.0 5.58e-01 100.0% 33.9%
4633346 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.95 91.0 5.69e-01 100.0% 22.4%
4982530 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.95 91.0 6.57e-01 100.0% 41.2%
3683117 2005.1.1.40 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g 0.94 91.0 6.48e-01 100.0% 39.4%
5025243 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.94 91.0 6.47e-01 100.0% 39.4%
4441740 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.94 86.0 6.23e-01 100.0% 39.1%
4506409 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.94 86.0 6.63e-01 100.0% 48.5%
4931175 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.94 90.0 6.40e-01 100.0% 39.2%
4152194 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.94 90.0 6.55e-01 100.0% 43.4%
None 0.93 90.0 5.62e-01 100.0% 22.6%
4215084 2005.1.1.40 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g 0.93 87.0 6.47e-01 100.0% 43.9%
4655765 2005.1.1.40 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g 0.93 87.0 6.23e-01 100.0% 38.8%
4073310 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.93 89.0 5.99e-01 100.0% 31.0%
4235284 375.1.1.203 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1, tRNA-synt_1g 0.93 89.0 6.26e-01 100.0% 37.3%
4072306 2005.1.1.40 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g 0.93 89.0 6.03e-01 100.0% 32.1%
4351010 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.93 87.0 5.97e-01 100.0% 33.5%
4430302 375.1.1.1 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1 0.93 87.0 6.04e-01 100.0% 35.3%
3739255 375.1.1.203 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1, tRNA-synt_1g 0.92 76.0 5.43e-01 100.0% 33.9%
4457826 2005.1.1.40 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g 0.92 87.0 5.93e-01 100.0% 32.9%
3765704 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.92 86.0 5.44e-01 100.0% 23.7%
4182113 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.92 85.0 6.15e-01 100.0% 39.7%
4474715 2005.1.1.40 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g 0.91 87.0 6.03e-01 100.0% 35.1%
4278167 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.91 81.0 6.05e-01 98.6% 42.0%
4531004 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.91 88.0 5.91e-01 100.0% 33.0%
4647979 375.1.1.1 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1 0.91 84.0 5.88e-01 100.0% 35.0%
4077229 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.91 85.0 6.00e-01 100.0% 37.2%
3928010 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.90 83.0 5.74e-01 100.0% 33.0%
3462627 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.90 84.0 5.89e-01 100.0% 35.3%
4097142 2005.1.1.40 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g 0.90 87.0 6.06e-01 100.0% 42.1%
3794072 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.90 85.0 6.06e-01 100.0% 38.3%
4992133 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.90 81.0 5.92e-01 100.0% 39.4%
3801341 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.90 85.0 5.33e-01 100.0% 22.5%
4317372 2005.1.1.40 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g 0.90 76.0 5.37e-01 90.6% 33.8%
4875557 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.89 84.0 7.62e-01 100.0% 76.7%
4980554 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.89 84.0 6.03e-01 100.0% 39.1%
3695412 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.89 85.0 6.08e-01 100.0% 38.9%
3640599 2005.1.1.40 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g 0.89 86.0 5.94e-01 100.0% 39.0%
None 0.89 85.0 5.37e-01 100.0% 24.2%
5061104 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.89 83.0 5.91e-01 100.0% 37.5%
4538454 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.88 83.0 5.78e-01 100.0% 35.5%
4943175 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.88 85.0 5.99e-01 100.0% 38.9%
4992514 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.88 83.0 7.64e-01 100.0% 80.0%
5040622 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.88 82.0 5.65e-01 100.0% 33.9%
5049743 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.87 82.0 5.75e-01 100.0% 35.5%
5046952 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.87 83.0 5.97e-01 100.0% 39.7%
5037525 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.87 80.0 5.83e-01 100.0% 40.3%
4970605 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.87 83.0 5.88e-01 100.0% 38.3%
4341293 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.86 81.0 6.21e-01 100.0% 47.7%
3499281 2005.1.1.40 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g 0.86 78.0 5.75e-01 94.9% 47.7%
5022621 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.86 82.0 5.91e-01 100.0% 43.5%
3920845 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.86 82.0 5.73e-01 100.0% 38.7%
4473847 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.85 80.0 5.53e-01 100.0% 33.8%
4106640 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.85 81.0 5.86e-01 100.0% 41.4%
3199809 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.85 81.0 5.45e-01 100.0% 31.9%
4105271 2005.1.1.40 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g 0.85 81.0 5.49e-01 100.0% 31.8%
4601352 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.85 81.0 5.15e-01 100.0% 23.7%
3510266 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.85 81.0 5.74e-01 100.0% 37.8%
3940154 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.85 74.0 5.25e-01 91.3% 33.6%
4126406 2005.1.1.40 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g 0.85 81.0 5.66e-01 100.0% 35.6%
3867498 2005.1.1.40 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g 0.85 81.0 5.48e-01 100.0% 33.0%
None 0.85 81.0 5.38e-01 100.0% 30.5%
3513876 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.85 81.0 5.04e-01 100.0% 22.4%
4965126 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.85 81.0 5.78e-01 100.0% 38.3%
None 0.85 81.0 5.08e-01 100.0% 22.6%
4359110 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.85 81.0 5.07e-01 100.0% 22.4%
3710673 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.85 81.0 6.44e-01 100.0% 57.6%
4221945 375.1.1.203 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1, tRNA-synt_1g 0.85 81.0 5.85e-01 100.0% 41.2%
4437633 2005.1.1.40 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g 0.85 81.0 5.75e-01 100.0% 38.9%
3195086 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.85 81.0 4.97e-01 100.0% 21.2%
3719240 2005.1.1.40 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g 0.85 80.0 5.69e-01 100.0% 38.9%
4434548 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.85 80.0 5.67e-01 100.0% 37.3%
4541432 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.84 80.0 5.39e-01 100.0% 30.3%
3737842 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.84 80.0 5.45e-01 100.0% 34.1%
4317001 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.83 79.0 5.79e-01 100.0% 42.4%
3958199 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.83 79.0 6.01e-01 100.0% 48.3%
4984160 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.77 73.0 5.02e-01 100.0% 35.0%
4974074 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.77 73.0 5.06e-01 100.0% 37.5%
3904969 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.76 72.0 5.82e-01 100.0% 71.7%
2599809 2005.1.1.40 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g 0.75 71.0 6.52e-01 100.0% 87.1%
D2 high residues 189-396
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ileA02 3.90.740.10 Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.93 83.0 8.66e-01 95.7% 97.4%
1gaxA03 3.90.740.10 Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.90 63.0 7.43e-01 94.2% 97.4%
1ffyA02 3.90.740.10 Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.87 79.0 7.96e-01 96.2% 94.7%
2wfgA00 3.90.740.10 Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.84 74.0 6.89e-01 90.9% 100.0%
3pz6D00 3.90.740.10 Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.83 74.0 6.81e-01 91.3% 100.0%
1wkbA02 3.90.740.10 Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.83 75.0 7.25e-01 92.8% 99.1%
4k47A00 3.90.740.10 Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.69 59.0 6.32e-01 90.4% 100.0%
2ajgA00 3.90.740.10 Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.69 60.0 6.34e-01 90.4% 100.0%
2r7kA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.54 17.0 3.15e-01 100.0% 93.4%
3t7yA00 3.40.1690.10 Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU 0.53 21.0 2.96e-01 97.1% 73.4%
ECOD (98)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4948616 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.98 97.0 9.17e-01 100.0% 89.8%
4052432 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.97 84.0 8.94e-01 93.8% 99.5%
4943329 1.1.1.40 beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1 0.97 83.0 8.89e-01 92.8% 98.9%
4272488 1.1.1.7 beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.96 88.0 9.04e-01 93.3% 98.5%
4928746 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.96 87.0 8.96e-01 92.8% 99.5%
4954110 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.95 88.0 8.54e-01 93.8% 99.6%
5041596 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.95 86.0 8.76e-01 92.3% 100.0%
4949204 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.95 83.0 8.32e-01 100.0% 88.0%
4932721 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.95 84.0 8.84e-01 92.8% 98.4%
4986747 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.95 86.0 8.90e-01 92.3% 97.9%
4341479 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.94 87.0 8.59e-01 93.8% 98.6%
4369641 1.1.1.7 beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.94 85.0 8.86e-01 92.3% 98.5%
4298864 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.94 83.0 8.70e-01 92.8% 98.4%
4427450 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.93 84.0 7.97e-01 91.3% 100.0%
4030609 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.93 85.0 8.00e-01 92.8% 100.0%
3255841 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.93 85.0 8.76e-01 93.3% 100.0%
3739650 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.93 66.0 7.81e-01 93.8% 99.3%
4177272 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.93 84.0 8.66e-01 92.8% 100.0%
4099366 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.93 81.0 8.65e-01 92.3% 100.0%
4134159 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.93 81.0 8.65e-01 90.9% 100.0%
4270694 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.93 84.0 8.73e-01 93.3% 98.5%
4199253 1.1.1.7 beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.93 85.0 8.61e-01 93.8% 99.0%
4543835 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.93 84.0 8.21e-01 92.3% 99.1%
4574076 1.1.1.7 beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.93 84.0 8.71e-01 93.3% 98.5%
3950920 7000.1.1.0 alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.93 84.0 8.63e-01 92.8% 100.0%
3647967 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.92 85.0 8.35e-01 93.8% 100.0%
3168968 3008.1.1.0 a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.92 84.0 8.67e-01 92.3% 100.0%
4106902 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.92 82.0 8.62e-01 92.3% 98.9%
4628376 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.92 84.0 8.05e-01 92.8% 95.7%
3988347 140.1.1.0 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.92 81.0 8.60e-01 90.9% 100.0%
4482513 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.92 85.0 8.39e-01 93.8% 99.5%
4074695 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.92 81.0 8.60e-01 90.9% 100.0%
3433288 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.92 84.0 8.26e-01 93.3% 99.1%
3951371 3008.1.1.0 a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.92 84.0 8.59e-01 92.8% 100.0%
4061062 1.1.1.7 beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.92 83.0 8.42e-01 91.8% 99.0%
4198519 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.92 84.0 8.38e-01 92.8% 100.0%
4058104 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.92 84.0 8.45e-01 93.8% 99.5%
4056330 1.1.1.7 beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.92 83.0 8.24e-01 92.3% 99.1%
4142507 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.92 83.0 8.65e-01 93.8% 98.5%
4441921 1.1.1.7 beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.92 64.0 7.59e-01 93.8% 98.0%
4274541 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.92 82.0 7.39e-01 91.8% 100.0%
3363691 1.1.1.7 beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.92 84.0 8.20e-01 92.8% 99.5%
4420099 1.1.1.7 beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.92 84.0 8.65e-01 93.8% 99.5%
4502628 1.1.1.7 beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.92 84.0 8.38e-01 92.8% 99.5%
4152972 1.1.1.7 beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.92 83.0 8.40e-01 92.3% 100.0%
4622447 1.1.1.7 beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.92 84.0 8.66e-01 93.8% 99.0%
3785870 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.92 84.0 8.42e-01 93.8% 99.0%
4017296 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.92 83.0 8.47e-01 92.3% 98.5%
4886707 375.1.1.304 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1_2 0.91 84.0 8.75e-01 93.8% 100.0%
4294300 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.91 84.0 8.71e-01 93.3% 100.0%
4620263 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.91 84.0 8.52e-01 93.8% 98.5%
3204174 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.91 84.0 8.40e-01 93.8% 98.6%
3164904 3008.1.1.0 a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.91 82.0 8.56e-01 91.8% 99.5%
4531362 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.91 82.0 8.59e-01 92.8% 100.0%
3253671 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.91 83.0 8.28e-01 92.3% 99.5%
4355247 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.91 82.0 8.60e-01 91.8% 100.0%
4276637 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.91 81.0 8.48e-01 91.8% 98.9%
3964528 377.1.3.2 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › Zinc-binding subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1_2 0.91 84.0 8.58e-01 93.8% 99.0%
3741691 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.91 80.0 8.46e-01 91.8% 98.9%
4578066 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.91 83.0 8.22e-01 93.3% 99.5%
4267075 1.1.1.7 beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.91 82.0 8.53e-01 92.3% 100.0%
4614587 1.1.1.7 beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.91 84.0 8.49e-01 94.2% 98.5%
4222539 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.91 83.0 8.53e-01 93.8% 99.0%
4060394 1.1.1.7 beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.90 83.0 8.19e-01 93.3% 99.5%
3175224 140.1.1.0 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.90 83.0 8.18e-01 93.3% 98.6%
4886652 2005.1.1.91 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1_2 0.90 83.0 8.48e-01 93.3% 99.0%
3407519 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.90 82.0 8.55e-01 93.8% 100.0%
3509019 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.89 80.0 8.24e-01 91.8% 100.0%
3586697 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.89 82.0 8.19e-01 93.8% 98.1%
4190434 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.89 80.0 7.95e-01 92.3% 99.1%
3839033 1.1.1.7 beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.89 79.0 8.31e-01 92.3% 99.5%
3489091 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.88 81.0 8.31e-01 93.8% 99.0%
3231024 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.88 78.0 8.02e-01 90.9% 100.0%
3385953 1.1.1.7 beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.87 80.0 8.26e-01 92.8% 99.5%
4945808 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.85 76.0 7.26e-01 91.8% 99.6%
5040695 1.1.1.7 beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.85 77.0 7.24e-01 92.8% 99.2%
5083142 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.85 76.0 7.52e-01 91.8% 100.0%
5055228 1.1.1.7 beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.85 76.0 7.17e-01 92.3% 97.9%
3877236 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.85 64.0 7.26e-01 92.8% 97.6%
3552773 7000.1.1.0 alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.85 75.0 7.00e-01 91.8% 100.0%
3771477 3008.1.1.0 a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.84 64.0 7.26e-01 92.8% 97.6%
4193962 1.1.1.7 beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.84 76.0 7.33e-01 92.8% 99.1%
1510628 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.84 75.0 6.67e-01 91.8% 100.0%
4616372 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.84 64.0 7.24e-01 92.8% 97.6%
4139100 1.1.1.7 beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.84 74.0 6.89e-01 90.9% 100.0%
3737549 3008.1.1.0 a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.84 75.0 6.92e-01 92.3% 99.6%
5000367 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.84 75.0 7.08e-01 92.3% 97.1%
5059398 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.84 73.0 7.06e-01 90.4% 100.0%
4953829 1.1.1.7 beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.84 75.0 7.17e-01 91.8% 100.0%
3489987 1.1.1.7 beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.83 63.0 7.19e-01 92.8% 100.0%
4026566 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.83 74.0 6.30e-01 92.3% 99.4%
4073746 1.1.1.7 beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.83 75.0 7.05e-01 92.8% 99.2%
5063344 1.1.1.7 beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.83 74.0 7.32e-01 91.8% 100.0%
5052742 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.83 74.0 7.06e-01 92.3% 99.1%
4042890 1.1.1.7 beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.82 74.0 7.38e-01 92.8% 99.5%
3477647 1.1.1.7 beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.81 63.0 7.03e-01 91.8% 97.1%
4952550 1.1.1.7 beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.81 62.0 6.93e-01 91.8% 98.2%
3227210 1.1.1.7 beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.79 63.0 6.93e-01 93.3% 97.7%