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IMGVR_UViG_3300013382_000193-3300013382-Ga0116618_10016241
Arc-VirIMGVR_UViG_3300013382_000193-3300013382-Ga0116618_10016241
Identity
- Kingdom:
- archaea
Quality
64.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 45-103
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kvtA00 | 3.30.730.30 | Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein | 0.70 | 56.0 | 5.25e-01 | 100.0% | 71.8% |
| 4jhmA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.61 | 53.0 | 4.28e-01 | 100.0% | 51.3% |
| 3ugvA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.59 | 50.0 | 4.02e-01 | 100.0% | 46.0% |
| 2v3aA03 | 3.30.390.120 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.59 | 32.0 | 3.11e-01 | 76.3% | 43.8% |
| 8gjaD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 45.0 | 2.97e-01 | 88.1% | 20.4% |
| 2l6mA00 | 3.30.160.400 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.56 | 47.0 | 3.99e-01 | 100.0% | 56.4% |
| 2zadA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.56 | 47.0 | 3.91e-01 | 100.0% | 98.2% |
| 1wp0A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 48.0 | 3.54e-01 | 100.0% | 85.6% |
| 6d92A01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.55 | 48.0 | 3.15e-01 | 100.0% | 23.8% |
| 2rhqB05 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.54 | 34.0 | 2.44e-01 | 98.3% | 18.6% |
| 3aj3A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.54 | 40.0 | 2.71e-01 | 84.7% | 92.7% |
| 2pgwA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.54 | 45.0 | 3.47e-01 | 100.0% | 78.0% |
| 1gd5A00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.54 | 44.0 | 3.47e-01 | 93.2% | 86.9% |
| 2nqlA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.54 | 43.0 | 3.30e-01 | 100.0% | 57.7% |
| 2r5rA00 | 3.10.270.10 | Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; | 0.54 | 44.0 | 3.06e-01 | 100.0% | 46.7% |
| 2yh9B00 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.53 | 34.0 | 3.32e-01 | 76.3% | 55.9% |
| 4hcsA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 35.0 | 3.39e-01 | 91.5% | 59.7% |
| 2gdqA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.53 | 46.0 | 3.84e-01 | 100.0% | 97.2% |
| 7c5wA01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 37.0 | 2.90e-01 | 78.0% | 70.3% |
| 3qldA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.53 | 44.0 | 3.40e-01 | 100.0% | 79.6% |
| 3vfcA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.52 | 43.0 | 3.37e-01 | 100.0% | 49.0% |
| 1bqgA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.52 | 44.0 | 3.46e-01 | 100.0% | 50.7% |
| 3bjsA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.52 | 44.0 | 3.62e-01 | 100.0% | 98.3% |
| 2ffgA00 | 3.30.720.20 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 | 0.52 | 37.0 | 3.44e-01 | 96.6% | 56.2% |
| 3iayA01 | 2.40.50.730 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 39.0 | 3.42e-01 | 94.9% | 52.0% |
| 4mx8C01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.51 | 39.0 | 2.88e-01 | 86.4% | 59.3% |
| 3iq2A00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.51 | 40.0 | 3.33e-01 | 93.2% | 89.4% |
| 1vq8B02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.51 | 40.0 | 3.23e-01 | 94.9% | 78.8% |
| 1kczA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.51 | 40.0 | 3.16e-01 | 100.0% | 93.3% |
| 3lh4A00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 38.0 | 3.21e-01 | 88.1% | 75.7% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3788285 | 395.1.1.4 ↗ | few secondary structure elements › Midkine-related › Midkine-related › Midkine-related › Flocculin_t3 | 0.62 | 44.0 | 4.67e-01 | 76.3% | 92.0% |
| 1174598 | 218.1.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N | 0.61 | 53.0 | 4.19e-01 | 100.0% | 47.6% |
| 3317450 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 47.0 | 3.91e-01 | 88.1% | 55.5% |
| 4930437 | 220.1.1.219 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch | 0.59 | 40.0 | 3.38e-01 | 78.0% | 40.0% |
| 4334767 | 218.1.1.0 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like | 0.59 | 51.0 | 4.42e-01 | 100.0% | 87.4% |
| 3592295 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.59 | 49.0 | 3.73e-01 | 100.0% | 37.5% |
| 2323851 | 1196.1.1.0 ↗ | 0.58 | 38.0 | 2.47e-01 | 79.7% | 13.7% | |
| 3617912 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.58 | 45.0 | 3.61e-01 | 100.0% | 42.5% |
| 3190012 | 883.1.1.12 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › DUF5923 | 0.57 | 41.0 | 2.78e-01 | 76.3% | 83.1% |
| 3226681 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.57 | 41.0 | 3.13e-01 | 98.3% | 31.7% |
| 3867284 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.57 | 48.0 | 2.85e-01 | 100.0% | 92.1% |
| 4982570 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.56 | 35.0 | 3.37e-01 | 78.0% | 52.9% |
| 3744517 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.56 | 48.0 | 3.90e-01 | 100.0% | 93.3% |
| 3925865 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.56 | 39.0 | 3.09e-01 | 98.3% | 35.8% |
| 4929236 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.56 | 35.0 | 3.36e-01 | 78.0% | 52.9% |
| 3759486 | 330.1.1.2 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 | 0.55 | 44.0 | 4.15e-01 | 100.0% | 72.5% |
| 3356898 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.54 | 47.0 | 3.56e-01 | 100.0% | 78.0% |
| 3718583 | 2485.1.1.12 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › SCO1-SenC | 0.54 | 48.0 | 3.16e-01 | 100.0% | 56.7% |
| 5062591 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.54 | 41.0 | 2.67e-01 | 93.2% | 15.8% |
| 3247792 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.54 | 44.0 | 3.61e-01 | 94.9% | 90.0% |
| 3797424 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.54 | 43.0 | 3.36e-01 | 100.0% | 84.8% |
| 3693076 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.54 | 43.0 | 3.36e-01 | 93.2% | 72.7% |
| 3592572 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.53 | 43.0 | 3.66e-01 | 100.0% | 53.8% |
| 3705696 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.53 | 39.0 | 2.71e-01 | 83.1% | 48.3% |
| 4319690 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.53 | 38.0 | 3.15e-01 | 79.7% | 88.3% |
| 4963974 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.52 | 38.0 | 2.46e-01 | 86.4% | 14.0% |
| 3593375 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.52 | 43.0 | 4.30e-01 | 98.3% | 100.0% |
| 3352266 | 9.2.1.3 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › FBO_C | 0.51 | 43.0 | 3.07e-01 | 100.0% | 30.2% |
| 3426157 | 219.1.1.71 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PDDEXK_6 | 0.51 | 39.0 | 2.97e-01 | 88.1% | 64.8% |
| 5050898 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.51 | 34.0 | 3.31e-01 | 79.7% | 58.6% |
| 5008723 | 2484.1.1.66 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 | 0.51 | 45.0 | 3.25e-01 | 100.0% | 79.4% |
| 5077400 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.51 | 39.0 | 3.31e-01 | 96.6% | 48.1% |
| 3663237 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.51 | 41.0 | 3.89e-01 | 100.0% | 76.2% |
| 3304245 | 219.1.1.71 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PDDEXK_6 | 0.51 | 38.0 | 2.81e-01 | 86.4% | 63.8% |
| 3733008 | 2484.1.1.114 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Med13_C | 0.51 | 40.0 | 2.65e-01 | 96.6% | 29.1% |
| 3678038 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.51 | 40.0 | 3.79e-01 | 93.2% | 94.7% |
| 4944241 | 2011.1.1.11 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M42 | 0.50 | 40.0 | 2.72e-01 | 98.3% | 94.4% |
| 3365937 | 4.8.1.2 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow | 0.50 | 35.0 | 3.53e-01 | 86.4% | 75.0% |
| 4234199 | 2485.1.1.12 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › SCO1-SenC | 0.50 | 43.0 | 3.04e-01 | 100.0% | 68.6% |