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IMGVR_UViG_3300013383_000029-3300013383-Ga0116616_100007170

Arc-Vir

IMGVR_UViG_3300013383_000029-3300013383-Ga0116616_100007170

Quality

56.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-156
PDB
D2 high residues 177-284
PDB
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ywuA00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.71 48.0 4.56e-01 98.1% 59.2%
3cddA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.71 57.0 4.67e-01 96.3% 49.5%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.70 52.0 5.05e-01 98.1% 68.9%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.69 49.0 4.94e-01 99.1% 72.1%
2nwaA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.67 42.0 4.87e-01 94.4% 89.3%
2ynaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.65 46.0 5.05e-01 96.3% 90.9%
3bp6B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 37.0 4.10e-01 86.1% 70.5%
2kvoA01 2.40.30.220 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Photosystem II Psb28 0.63 47.0 4.84e-01 99.1% 82.7%
2qckA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 56.0 4.96e-01 98.1% 76.2%
1hw7A01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.61 44.0 3.72e-01 73.1% 99.4%
2cy5A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 36.0 3.39e-01 99.1% 49.6%
2d37A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 54.0 4.75e-01 98.1% 74.2%
3cb0D00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 54.0 4.66e-01 98.1% 75.2%
3bnkA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 53.0 4.41e-01 98.1% 64.5%
1ejeA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 53.0 4.35e-01 98.1% 64.6%
4xhyA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 53.0 4.60e-01 98.1% 71.4%
4l82A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 52.0 4.61e-01 98.1% 75.6%
1rz1A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 53.0 4.68e-01 98.1% 75.0%
2r6vA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 53.0 4.55e-01 98.1% 73.2%
2ecuA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 52.0 4.68e-01 98.1% 73.2%
3b5mA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 52.0 5.05e-01 98.1% 89.1%
4f07E00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 52.0 4.63e-01 98.1% 76.5%
4dqlB01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 37.0 3.77e-01 94.4% 65.1%
1jz7A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 39.0 3.86e-01 74.1% 66.1%
4azsA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 39.0 4.41e-01 83.3% 93.8%
2veaA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 39.0 3.67e-01 70.4% 73.1%
3nfwA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 50.0 4.25e-01 98.1% 65.4%
1wzlA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 38.0 3.67e-01 86.1% 62.0%
3f56A01 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.55 40.0 4.12e-01 85.2% 77.4%
5lt5A02 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.55 39.0 4.09e-01 75.0% 78.4%
2epbA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 23.0 2.84e-01 82.4% 58.8%
1uscA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 48.0 4.06e-01 98.1% 67.4%
3zugB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.53 44.0 4.04e-01 88.9% 82.4%
3kg8A01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 43.0 4.12e-01 100.0% 74.6%
3wa5B00 2.60.120.1690 Mainly Beta › Sandwich › Jelly Rolls › 0.52 37.0 3.58e-01 75.9% 64.5%
4z1xA02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.52 36.0 3.35e-01 94.4% 54.5%
3wirA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.51 40.0 3.05e-01 83.3% 81.6%
1a1xA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.51 43.0 4.40e-01 93.5% 92.5%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.51 45.0 4.19e-01 98.1% 93.4%
1e62A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 39.0 3.75e-01 93.5% 70.3%
2vtfA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 41.0 3.50e-01 88.0% 86.4%
1ddgA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 37.0 3.70e-01 95.4% 73.7%
6hswA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 42.0 2.92e-01 93.5% 82.1%
5gxuB01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.50 37.0 3.61e-01 95.4% 69.7%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4033712 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.80 61.0 6.78e-01 94.4% 100.0%
4141852 1.1.13.56 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › YQBQ 0.79 59.0 6.55e-01 96.3% 97.6%
184486 1.1.13.26 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › GpP-like_1st 0.78 54.0 6.19e-01 96.3% 95.1%
184471 1.1.13.26 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › GpP-like_1st 0.78 58.0 6.48e-01 96.3% 97.7%
4500974 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.77 55.0 5.27e-01 99.1% 65.8%
4995815 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.75 64.0 6.07e-01 99.1% 77.6%
3868227 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.73 46.0 4.89e-01 74.1% 71.6%
4316037 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.73 50.0 4.98e-01 98.1% 69.1%
3243970 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 50.0 5.22e-01 94.4% 77.0%
77 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.71 49.0 4.95e-01 98.1% 70.9%
4957565 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.69 62.0 5.86e-01 95.4% 95.2%
1161129 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.69 52.0 5.17e-01 99.1% 75.9%
3288000 305.1.1.7 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › GDH_ACT2 0.66 42.0 4.37e-01 75.0% 69.0%
3384073 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 48.0 4.65e-01 88.9% 68.3%
4381495 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.66 40.0 4.31e-01 88.0% 72.2%
None 0.65 42.0 3.66e-01 75.9% 43.8%
3384789 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.65 39.0 3.92e-01 73.1% 58.2%
4954552 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.65 59.0 5.15e-01 100.0% 92.5%
3741921 1.1.7.81 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.64 48.0 4.94e-01 94.4% 81.0%
5024522 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 52.0 4.45e-01 96.3% 56.4%
4502887 1.11.1.1 beta barrels › cradle loop barrel › Photosystem II accessory factor Psb28 › Photosystem II accessory factor Psb28 › Psb28 0.63 49.0 4.97e-01 99.1% 84.8%
3688711 1.1.7.81 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.62 49.0 4.87e-01 95.4% 80.9%
4373808 1.11.1.1 beta barrels › cradle loop barrel › Photosystem II accessory factor Psb28 › Photosystem II accessory factor Psb28 › Psb28 0.61 48.0 4.78e-01 99.1% 81.8%
3635644 319.1.1.14 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HECT_2 0.61 45.0 4.49e-01 75.9% 99.1%
3187444 1.1.7.81 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.61 49.0 4.80e-01 89.8% 80.0%
3744150 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.61 55.0 4.57e-01 98.1% 66.8%
5049721 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.61 52.0 4.98e-01 100.0% 80.8%
164880 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.60 54.0 4.70e-01 98.1% 73.0%
3786062 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.59 54.0 4.59e-01 98.1% 72.1%
3723056 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 46.0 3.99e-01 83.3% 58.2%
3224730 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 47.0 4.68e-01 94.4% 82.7%
5017812 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.59 54.0 4.39e-01 98.1% 64.7%
4600482 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.58 53.0 4.56e-01 98.1% 70.9%
3283939 3781.2.1.0 a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › ssDNA-binding protein ThermoDBP-related › ssDNA-binding protein ThermoDBP-related 0.58 41.0 3.79e-01 73.1% 93.7%
3611250 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.58 53.0 4.74e-01 98.1% 86.2%
4583708 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.58 47.0 3.63e-01 85.2% 90.7%
1217791 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.58 52.0 4.44e-01 98.1% 66.7%
3609669 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.58 47.0 3.79e-01 87.0% 88.3%
3601361 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.58 48.0 3.60e-01 88.0% 91.2%
300370 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.57 51.0 4.52e-01 98.1% 74.4%
4026004 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 48.0 4.71e-01 90.7% 85.2%
4926809 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.57 52.0 4.49e-01 98.1% 75.0%
6866 223.1.1.12 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 0.57 39.0 3.82e-01 70.4% 81.2%
3175500 11.1.5.7 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub 0.55 44.0 3.17e-01 86.1% 70.9%
5029520 12.5.1.0 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.54 40.0 3.74e-01 83.3% 60.7%
5055592 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 42.0 4.17e-01 99.1% 77.4%
70 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.54 48.0 4.06e-01 98.1% 67.4%
3981665 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 44.0 4.46e-01 91.7% 96.4%
3718635 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 41.0 2.70e-01 84.3% 19.6%
4593266 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.53 26.0 3.10e-01 94.4% 66.7%
5016948 876.1.1.7 a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › AIPR 0.52 45.0 3.97e-01 95.4% 95.6%
3909282 11.1.1.414 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TMEM106 0.52 37.0 3.32e-01 75.0% 51.2%
3600109 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 40.0 2.63e-01 83.3% 34.2%
3281552 881.4.1.3 a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › DUF4245 0.51 40.0 3.69e-01 86.1% 65.2%
3309918 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.51 40.0 3.89e-01 98.1% 73.6%
5074211 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.51 41.0 3.91e-01 85.2% 95.1%
3976508 876.1.1.7 a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › AIPR 0.51 42.0 3.81e-01 93.5% 94.8%
3291529 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.51 38.0 3.81e-01 84.3% 78.7%
D3 medium residues 288-388
PDB
D4 medium residues 411-479_523-536
PDB
D5 medium residues 537-641
PDB