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IMGVR_UViG_3300013772_000385-3300013772-Ga0120158_100087406

Arc-Vir

IMGVR_UViG_3300013772_000385-3300013772-Ga0120158_100087406

Quality

87.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-56
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2q18X01 3.10.330.40 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.68 49.0 4.54e-01 77.8% 100.0%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 55.0 4.91e-01 98.1% 84.5%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.65 49.0 3.90e-01 81.5% 53.6%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.65 47.0 3.33e-01 77.8% 34.9%
3bb7A01 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.65 53.0 3.87e-01 100.0% 46.0%
4gp0B02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.64 45.0 3.59e-01 77.8% 98.4%
2fdbN00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.63 45.0 3.39e-01 79.6% 87.8%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.61 50.0 4.58e-01 94.4% 100.0%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.61 47.0 4.85e-01 94.4% 96.0%
4gipD03 2.60.40.1690 Mainly Beta › Sandwich › Immunoglobulin-like › Head and neck region of the ectodomain of NDV fusion glycoprotein 0.60 44.0 4.35e-01 100.0% 75.4%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.60 45.0 4.09e-01 87.0% 93.9%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.59 44.0 3.78e-01 87.0% 86.0%
6lf2B01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 42.0 3.36e-01 83.3% 98.4%
2yfoA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 50.0 4.18e-01 100.0% 80.2%
3ho6B00 3.40.50.11050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MARTX cysteine protease (CPD) domain 0.55 47.0 3.09e-01 100.0% 34.0%
1cjxA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 39.0 2.97e-01 79.6% 74.0%
2aaaA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 46.0 3.85e-01 100.0% 70.6%
4z32C02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 44.0 3.72e-01 96.3% 85.9%
1wzlA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 45.0 3.98e-01 100.0% 80.7%
2wvxA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 37.0 2.43e-01 75.9% 63.2%
3x3mA01 3.30.2390.20 Alpha Beta › 2-Layer Sandwich › TTHA1013/TTHA0281-like › Type VII secretion system EccB, repeat 1 domain 0.53 38.0 3.34e-01 75.9% 62.2%
3mpxA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 37.0 3.23e-01 79.6% 73.2%
2hh8A00 3.30.1810.10 Alpha Beta › 2-Layer Sandwich › YdfO-like fold › YdfO-like 0.52 38.0 3.14e-01 87.0% 86.6%
4ba0A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 43.0 4.41e-01 100.0% 100.0%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3715537 4.1.1.41 beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.71 52.0 3.63e-01 77.8% 27.8%
3708283 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 57.0 4.91e-01 92.6% 90.6%
4003955 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.65 50.0 3.36e-01 100.0% 21.4%
3799828 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.64 49.0 3.11e-01 100.0% 16.0%
3282690 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.63 49.0 3.95e-01 96.3% 40.8%
4937102 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 42.0 3.15e-01 81.5% 26.2%
4930861 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.63 52.0 5.01e-01 98.1% 92.3%
3401697 4357.1.1.4 beta barrels › WWE domain › WWE domain › WWE domain › WWE_3 0.63 46.0 4.08e-01 83.3% 71.8%
3699893 2003.1.10.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.60 44.0 3.39e-01 79.6% 46.7%
3241663 4.1.1.25 beta barrels › SH3 › SH3 › SH3 › PAZ 0.59 46.0 3.84e-01 96.3% 97.4%
3981090 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.59 44.0 4.39e-01 94.4% 80.0%
3941925 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 44.0 4.12e-01 94.4% 64.3%
3884178 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.59 48.0 4.46e-01 100.0% 84.0%
3978012 11.1.4.25 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PapC_C 0.59 45.0 3.85e-01 94.4% 51.1%
4120506 243.11.1.4 a+b two layers › Cystatin-like › NP_346341.1 protein › NP_346341.1 protein › PF29632 0.58 41.0 3.77e-01 79.6% 72.5%
5024805 4.2.1.3 beta barrels › SH3 › SAND › SAND › RAMA 0.58 48.0 4.31e-01 98.1% 81.2%
4945686 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 39.0 2.83e-01 81.5% 23.2%
3575906 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 49.0 3.62e-01 100.0% 90.3%
3231010 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.57 47.0 3.55e-01 100.0% 93.5%
5029643 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.57 47.0 4.24e-01 98.1% 85.0%
5055961 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.57 47.0 4.24e-01 98.1% 85.0%
3299832 6.1.1.0 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.57 40.0 3.07e-01 77.8% 89.7%
4940665 9.16.1.0 beta barrels › Lipocalins/Streptavidin › Hypothetical protein Atu4866 › Hypothetical protein Atu4866 0.57 43.0 3.86e-01 87.0% 97.6%
5012352 4312.1.1.15 a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.55 38.0 3.25e-01 72.2% 68.2%
5005032 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.54 44.0 4.19e-01 100.0% 91.4%
5032782 9.23.1.0 beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 0.54 41.0 3.63e-01 88.9% 100.0%
5034643 9.23.1.0 beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 0.54 41.0 3.66e-01 90.7% 98.9%
3649491 11.1.4.16 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › EMC7_beta-sandw 0.53 40.0 3.68e-01 90.7% 66.3%
3243400 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 41.0 2.95e-01 96.3% 68.8%
3650026 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 37.0 3.49e-01 79.6% 61.5%
3607276 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.52 43.0 4.06e-01 100.0% 90.0%
4013485 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 44.0 3.03e-01 100.0% 27.0%
3599169 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 37.0 3.19e-01 88.9% 76.2%
D2 high residues 59-102
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cklA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.66 46.0 3.67e-01 77.3% 48.0%
4r7eA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.64 45.0 3.92e-01 75.0% 62.3%
5hkxA04 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.63 44.0 4.44e-01 75.0% 90.9%
1m0wB05 3.30.1490.50 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Glutathione synthase lid domain 0.63 50.0 4.74e-01 100.0% 98.3%
2yvrA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.61 40.0 4.02e-01 77.3% 66.7%
3htkC02 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 43.0 4.12e-01 77.3% 85.2%
4zohB02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.60 48.0 3.81e-01 100.0% 85.3%
1zakA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 41.0 2.67e-01 77.3% 14.5%
3l2pA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.58 44.0 4.03e-01 100.0% 76.1%
1vajA02 3.30.1490.150 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Hypothetical protein ph0010; domain 2 0.57 44.0 3.98e-01 100.0% 94.6%
4ru1A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 42.0 3.08e-01 93.2% 45.3%
2o5hA00 1.10.3510.10 Mainly Alpha › Orthogonal Bundle › NMB0513-like › NMB0513-like 0.54 43.0 3.28e-01 95.5% 69.5%
2l1aA00 3.10.20.530 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 41.0 3.34e-01 100.0% 80.4%
1yc5A02 3.30.1600.10 Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' 0.53 42.0 3.59e-01 97.7% 81.0%
4aybP00 2.20.28.30 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase ii, chain L 0.53 36.0 3.62e-01 75.0% 72.7%
3adrB00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 38.0 2.45e-01 81.8% 38.3%
2yhoE00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.50 34.0 3.08e-01 75.0% 52.9%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3806562 904.1.1.0 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.68 47.0 4.71e-01 75.0% 73.3%
3522307 904.1.1.3 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › ANCHR-like_BBOX 0.67 47.0 4.68e-01 75.0% 73.3%
3408360 904.1.1.3 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › ANCHR-like_BBOX 0.65 45.0 4.50e-01 75.0% 75.6%
3619152 904.1.1.1 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.64 46.0 4.28e-01 81.8% 90.0%
3716757 904.1.1.1 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.63 43.0 4.28e-01 77.3% 68.9%
3520329 904.1.1.0 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.62 43.0 4.28e-01 75.0% 75.6%
3392056 376.1.1.23 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.61 41.0 3.39e-01 70.5% 56.5%
4329890 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.61 43.0 3.03e-01 77.3% 23.3%
4527101 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.60 43.0 2.98e-01 77.3% 21.9%
4246886 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 42.0 3.99e-01 77.3% 63.6%
4241167 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.60 42.0 2.90e-01 77.3% 20.6%
4467359 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.60 42.0 2.87e-01 77.3% 20.6%
4221024 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 43.0 2.79e-01 77.3% 17.1%
5042462 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.60 42.0 2.93e-01 77.3% 21.2%
4645846 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.59 42.0 2.87e-01 77.3% 21.2%
3502901 904.1.1.0 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.59 40.0 3.99e-01 75.0% 69.4%
4466102 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.59 41.0 2.83e-01 77.3% 20.6%
3653663 377.1.1.12 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-C5HC2 0.59 47.0 3.26e-01 95.5% 34.5%
5000735 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 41.0 2.81e-01 77.3% 20.0%
4480958 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 42.0 4.23e-01 77.3% 84.1%
4338085 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 41.0 4.16e-01 77.3% 80.0%
4930596 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.58 42.0 2.85e-01 77.3% 20.6%
4546356 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 41.0 3.43e-01 77.3% 42.4%
4403519 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 41.0 2.85e-01 77.3% 21.2%
4456198 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 42.0 2.84e-01 79.5% 19.5%
5028348 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.58 41.0 2.70e-01 75.0% 17.4%
5080684 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.58 41.0 2.90e-01 77.3% 23.2%
3536989 386.1.1.333 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Zf-C2H2_ZNF451_5th 0.58 40.0 4.25e-01 75.0% 94.3%
4953034 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 41.0 4.15e-01 77.3% 77.8%
5082510 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 41.0 4.21e-01 77.3% 90.0%
5082704 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.58 41.0 2.75e-01 77.3% 18.5%
5070884 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 41.0 3.58e-01 77.3% 51.4%
5054122 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.57 40.0 2.84e-01 77.3% 22.5%
4646072 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.57 40.0 2.79e-01 77.3% 21.2%
5039984 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.57 41.0 2.83e-01 79.5% 21.8%
3530650 386.1.1.133 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2+zf-C2H2_4 0.56 38.0 3.60e-01 75.0% 58.3%
4967657 375.1.1.325 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › OapC 0.55 38.0 3.79e-01 75.0% 75.6%
4004118 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.54 38.0 2.61e-01 79.5% 22.7%
4945555 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 36.0 3.71e-01 75.0% 94.3%
3589328 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 36.0 3.79e-01 79.5% 97.1%
3217237 375.1.1.18 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › SIR2 0.50 40.0 3.23e-01 97.7% 92.4%
3601696 375.1.1.18 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › SIR2 0.50 39.0 3.23e-01 97.7% 91.0%
4505851 375.1.1.18 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › SIR2 0.50 38.0 2.60e-01 97.7% 44.1%