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IMGVR_UViG_3300013886_000019-3300013886-Ga0181296_10014318
Arc-VirIMGVR_UViG_3300013886_000019-3300013886-Ga0181296_10014318
Identity
- Kingdom:
- archaea
Quality
84.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-41
Domain cluster:
representative
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1jg5A00 | 3.30.1410.10 | Alpha Beta › 2-Layer Sandwich › Gtp Cyclohydrolase I Feedback Regulatory Protein; Chain: K › GTP cyclohydrolase I feedback regulatory protein GFRP | 0.68 | 54.0 | 4.52e-01 | 97.6% | 55.4% |
| 3l9fA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 43.0 | 3.39e-01 | 100.0% | 31.5% |
| 3zcoA00 | 1.10.10.2450 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.63 | 49.0 | 3.43e-01 | 100.0% | 27.6% |
| 3wisA00 | 3.40.50.1950 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavin prenyltransferase-like | 0.61 | 51.0 | 3.39e-01 | 97.6% | 95.6% |
| 5e1wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 47.0 | 3.09e-01 | 85.4% | 73.8% |
| 3flkA00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.61 | 53.0 | 3.09e-01 | 100.0% | 17.8% |
| 3vkhA08 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 44.0 | 2.63e-01 | 95.1% | 10.3% |
| 2rdpA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 43.0 | 3.00e-01 | 80.5% | 24.3% |
| 3cjnA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 43.0 | 2.98e-01 | 80.5% | 24.0% |
| 3zqmA00 | 6.10.140.2160 | Special › Helix non-globular › Helix Hairpins › | 0.58 | 45.0 | 3.98e-01 | 85.4% | 72.9% |
| 2xmjA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 48.0 | 4.24e-01 | 97.6% | 90.5% |
| 1rtzA00 | 3.30.70.560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK | 0.57 | 47.0 | 3.29e-01 | 100.0% | 49.3% |
| 2uvaG11 | 6.10.60.10 | Special › Helix non-globular › Hydrophobic Seed Protein › | 0.56 | 34.0 | 3.09e-01 | 87.8% | 36.4% |
| 2m7aA00 | 1.10.10.1920 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.56 | 47.0 | 3.76e-01 | 97.6% | 50.0% |
| 1ybtB00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.56 | 43.0 | 2.88e-01 | 87.8% | 20.9% |
| 5cflA02 | 3.40.50.12100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein | 0.54 | 46.0 | 3.18e-01 | 100.0% | 63.3% |
| 7jgsG02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 42.0 | 3.24e-01 | 87.8% | 57.1% |
| 3ix3A00 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.53 | 39.0 | 2.79e-01 | 87.8% | 84.7% |
| 2wasA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.53 | 43.0 | 3.14e-01 | 100.0% | 32.7% |
| 2wdoA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.53 | 45.0 | 3.21e-01 | 100.0% | 32.5% |
| 1xhbA01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.53 | 46.0 | 2.81e-01 | 97.6% | 32.2% |
| 3nroA00 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.53 | 41.0 | 2.65e-01 | 90.2% | 90.6% |
| 3mk7C01 | 6.10.280.130 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 45.0 | 3.43e-01 | 95.1% | 70.2% |
| 2bddA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.53 | 39.0 | 2.84e-01 | 100.0% | 26.8% |
| 2mkyA00 | 3.30.70.1530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 | 0.53 | 39.0 | 3.69e-01 | 95.1% | 87.9% |
| 7kfuC02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.53 | 45.0 | 2.85e-01 | 97.6% | 92.3% |
| 3cxbB00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 41.0 | 3.09e-01 | 87.8% | 47.6% |
| 6psyA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.52 | 40.0 | 2.65e-01 | 97.6% | 78.9% |
| 1s12A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.52 | 45.0 | 3.44e-01 | 97.6% | 77.7% |
| 3es5A02 | 1.20.272.60 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.52 | 39.0 | 2.91e-01 | 87.8% | 73.0% |
| 3rioA01 | 2.30.24.10 | Mainly Beta › Roll › Transcription Regulation, Sacy; Chain A › CAT RNA-binding domain | 0.52 | 43.0 | 3.73e-01 | 100.0% | 92.6% |
| 2qv6B02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.52 | 42.0 | 3.13e-01 | 100.0% | 58.2% |
| 3ltoA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.52 | 39.0 | 2.86e-01 | 87.8% | 30.6% |
| 2gk4A00 | 3.40.50.10300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like | 0.52 | 45.0 | 2.84e-01 | 100.0% | 60.7% |
| 1f02T00 | 4.10.820.10 | Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain | 0.51 | 44.0 | 3.78e-01 | 97.6% | 78.8% |
| 1y3iA01 | 3.40.50.10330 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 | 0.51 | 38.0 | 3.08e-01 | 87.8% | 81.9% |
| 3lv0A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.51 | 43.0 | 3.01e-01 | 97.6% | 35.3% |
| 3ec3A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 44.0 | 3.30e-01 | 100.0% | 97.3% |
| 8cvmg01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.51 | 36.0 | 3.18e-01 | 82.9% | 45.9% |
| 1ub9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 44.0 | 3.35e-01 | 100.0% | 74.0% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.51 | 44.0 | 2.93e-01 | 100.0% | 55.7% |
| 2pvuA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.50 | 38.0 | 2.81e-01 | 85.4% | 74.8% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3289385 | 3433.1.2.1 ↗ | a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain › ParB_dimer | 0.69 | 38.0 | 3.57e-01 | 87.8% | 44.0% |
| 3269126 | 109.4.1.1265 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PUF, PUF_NOP9 | 0.69 | 42.0 | 2.32e-01 | 87.8% | 4.7% |
| 3601791 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.68 | 46.0 | 2.48e-01 | 100.0% | 3.4% |
| 4043003 | 601.7.1.6 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › GlnD_UR_UTase | 0.67 | 46.0 | 3.04e-01 | 97.6% | 17.6% |
| 4976955 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.66 | 42.0 | 2.53e-01 | 100.0% | 9.8% |
| 3512361 | 101.1.2.137 ↗ | alpha arrays › HTH › HTH › winged helix domain › OST-HTH | 0.63 | 44.0 | 3.46e-01 | 97.6% | 35.3% |
| 3933404 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.62 | 45.0 | 3.03e-01 | 97.6% | 21.3% |
| 3622943 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.60 | 48.0 | 4.11e-01 | 100.0% | 76.0% |
| 5057313 | 3352.1.1.2 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › PMT_2 | 0.59 | 46.0 | 2.76e-01 | 97.6% | 11.7% |
| 3980700 | 2006.1.1.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.59 | 45.0 | 3.04e-01 | 87.8% | 97.8% |
| 4980177 | 101.1.2.150 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_45 | 0.58 | 42.0 | 3.09e-01 | 80.5% | 30.0% |
| 3989311 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.58 | 49.0 | 3.53e-01 | 97.6% | 81.5% |
| 3710611 | 2007.2.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc | 0.58 | 43.0 | 2.62e-01 | 95.1% | 12.5% |
| 4958659 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.58 | 41.0 | 3.34e-01 | 80.5% | 38.9% |
| 2028025 | 1070.2.1.1 ↗ | alpha complex topology › CRISPR-associated endonuclease first helical domain › CRISPR-associated endonuclease C2c1 first helical domain › CRISPR-associated endonuclease C2c1 first helical domain › C2c1_helical_1st | 0.58 | 49.0 | 2.90e-01 | 100.0% | 30.5% |
| 3600598 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.57 | 48.0 | 3.40e-01 | 97.6% | 85.7% |
| 3936421 | 3948.1.1.0 ↗ | alpha bundles › V(D)J recombination-activating protein 1 helical bundle domain › V(D)J recombination-activating protein 1 helical bundle domain › V(D)J recombination-activating protein 1 helical bundle domain | 0.57 | 40.0 | 2.69e-01 | 92.7% | 18.8% |
| 3581490 | 2.1.1.72 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › POT1PC | 0.57 | 47.0 | 3.28e-01 | 100.0% | 80.0% |
| 4122987 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.57 | 45.0 | 3.42e-01 | 97.6% | 44.3% |
| 3970671 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.56 | 45.0 | 3.67e-01 | 87.8% | 52.0% |
| 4992389 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 44.0 | 3.35e-01 | 85.4% | 41.1% |
| 1033457 | 3218.1.1.0 ↗ | a+b duplicates or obligate multimers › small terminase oligomerization domain › small terminase oligomerization domain › small terminase oligomerization domain | 0.56 | 45.0 | 4.00e-01 | 87.8% | 75.9% |
| 4410759 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.56 | 45.0 | 3.23e-01 | 87.8% | 87.8% |
| 3499583 | 109.4.1.1196 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Glyco_hydro_15 | 0.56 | 40.0 | 2.47e-01 | 78.0% | 13.8% |
| 3487912 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 41.0 | 3.27e-01 | 97.6% | 80.9% |
| 4592147 | 109.4.1.1265 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PUF, PUF_NOP9 | 0.54 | 42.0 | 2.36e-01 | 85.4% | 7.5% |
| 3559562 | 327.11.2.21 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_N4BP1_2nd | 0.54 | 47.0 | 3.87e-01 | 100.0% | 84.0% |
| 3609240 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.54 | 44.0 | 2.88e-01 | 97.6% | 62.4% |
| 5055904 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 42.0 | 3.26e-01 | 97.6% | 35.7% |
| 3286591 | 101.1.2.612 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2, PF27059 | 0.53 | 42.0 | 2.89e-01 | 87.8% | 26.2% |
| 4968065 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 45.0 | 3.10e-01 | 100.0% | 49.0% |
| 4938723 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.53 | 43.0 | 3.02e-01 | 90.2% | 30.0% |
| 3280999 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.53 | 43.0 | 2.91e-01 | 90.2% | 25.8% |
| 5042104 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.53 | 47.0 | 3.76e-01 | 100.0% | 86.3% |
| 5012277 | 101.1.2.904 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_38 | 0.53 | 42.0 | 3.52e-01 | 90.2% | 52.0% |
| 4889887 | 4964.1.1.1 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A | 0.53 | 44.0 | 3.03e-01 | 95.1% | 36.3% |
| 4025070 | 101.1.2.407 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 | 0.53 | 39.0 | 3.00e-01 | 90.2% | 68.3% |
| 3251263 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.52 | 46.0 | 2.65e-01 | 100.0% | 76.8% |
| 3931606 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.52 | 40.0 | 2.96e-01 | 87.8% | 53.0% |
| 5037176 | 101.1.2.92 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_11 | 0.52 | 43.0 | 3.31e-01 | 92.7% | 43.3% |
| 4615793 | 101.1.2.92 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_11 | 0.51 | 37.0 | 3.20e-01 | 97.6% | 80.0% |
| 3931636 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.51 | 35.0 | 3.27e-01 | 78.0% | 60.0% |
| 5047068 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 41.0 | 2.74e-01 | 97.6% | 45.3% |
| 4033238 | 101.1.2.804 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF27113 | 0.51 | 41.0 | 2.82e-01 | 100.0% | 40.6% |
| 5018467 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 38.0 | 3.04e-01 | 87.8% | 41.9% |
| 5000805 | 327.11.2.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 | 0.50 | 44.0 | 3.40e-01 | 97.6% | 67.0% |
| 4301114 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.50 | 43.0 | 3.75e-01 | 100.0% | 89.2% |
| 4979509 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 42.0 | 3.30e-01 | 97.6% | 72.6% |