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IMGVR_UViG_3300014028_000007-3300014028-Ga0117810_10001263

Arc-Vir

IMGVR_UViG_3300014028_000007-3300014028-Ga0117810_10001263

Quality

81.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-50
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8d3lA01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.71 47.0 3.82e-01 72.9% 37.5%
4n06A01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.69 47.0 3.97e-01 72.9% 68.3%
3d79A01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.68 40.0 3.46e-01 77.1% 37.8%
3dmlA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.65 49.0 4.09e-01 87.5% 98.9%
4khbD02 2.30.29.220 Mainly Beta › Roll › PH-domain like › Structure-specific recognition protein (SSRP1) 0.65 44.0 3.78e-01 72.9% 77.8%
3noyB02 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.64 47.0 3.87e-01 97.9% 41.1%
7kfuC01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.64 44.0 3.81e-01 72.9% 73.3%
2h3gX01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.63 50.0 4.30e-01 95.8% 55.7%
2x49A01 3.40.30.60 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 0.63 53.0 4.33e-01 100.0% 89.6%
1nw2A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.62 47.0 3.77e-01 87.5% 80.0%
3djcB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 49.0 4.26e-01 97.9% 55.7%
1r26A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.62 50.0 3.87e-01 91.7% 76.1%
2yyzA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.61 42.0 4.06e-01 91.7% 62.1%
2r31A01 3.30.2180.10 Alpha Beta › 2-Layer Sandwich › ATP12-like › ATP12-like 0.61 52.0 4.76e-01 100.0% 77.3%
2wm1A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.60 52.0 3.16e-01 100.0% 46.1%
6liuC02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.60 50.0 3.82e-01 95.8% 83.6%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 50.0 3.87e-01 93.8% 82.6%
1kkmB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 52.0 3.59e-01 100.0% 80.2%
4o2zA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 51.0 3.55e-01 95.8% 57.5%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.59 46.0 3.84e-01 95.8% 60.4%
4e4tA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.59 48.0 3.16e-01 100.0% 21.3%
2npbA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 48.0 4.03e-01 93.8% 80.7%
4e1oA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.59 52.0 4.15e-01 100.0% 88.8%
2fa8B00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 46.0 3.92e-01 91.7% 89.7%
2od0A00 3.30.1460.30 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › YgaC/TfoX-N like chaperone 0.58 46.0 3.63e-01 89.6% 72.8%
4mamB03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.58 44.0 2.96e-01 83.3% 29.3%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 48.0 3.48e-01 93.8% 72.4%
3bu2A02 3.30.1940.10 Alpha Beta › 2-Layer Sandwich › Nucleic acid-binding protein fold › YtpR-like 0.57 40.0 3.57e-01 72.9% 63.8%
3df7A02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.57 43.0 3.18e-01 83.3% 40.1%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 43.0 3.82e-01 85.4% 56.8%
2kpiA01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.57 37.0 3.93e-01 77.1% 82.1%
2wsuA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 45.0 3.37e-01 93.8% 49.6%
3pnnA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.56 46.0 2.94e-01 100.0% 46.5%
5ddtA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.56 45.0 2.98e-01 93.8% 53.9%
7xinA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.56 45.0 3.55e-01 93.8% 88.1%
1zbsA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 43.0 3.64e-01 95.8% 56.2%
3lovA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 49.0 3.42e-01 100.0% 89.5%
4gt6A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.54 39.0 2.31e-01 77.1% 16.9%
4epkB00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.54 46.0 2.80e-01 97.9% 62.1%
3ap9A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 38.0 2.88e-01 81.2% 46.4%
1hfxA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.54 44.0 3.35e-01 95.8% 61.0%
4amcA01 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.54 32.0 3.32e-01 83.3% 63.0%
2d4aA02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.53 44.0 3.09e-01 93.8% 82.5%
4mybA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.53 43.0 2.86e-01 93.8% 53.5%
2o30A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 36.0 3.20e-01 75.0% 97.6%
4bjzA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 43.0 3.10e-01 100.0% 44.0%
7x68A01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.52 37.0 3.74e-01 81.2% 76.0%
3rklA00 6.10.140.1640 Special › Helix non-globular › Helix Hairpins › 0.51 44.0 3.71e-01 95.8% 87.5%
1e2tA03 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.51 45.0 3.40e-01 100.0% 53.0%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3604572 243.6.1.1 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.73 42.0 3.62e-01 77.1% 38.6%
4091244 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.72 60.0 4.51e-01 95.8% 39.2%
4293728 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.69 56.0 4.26e-01 95.8% 39.2%
5026068 2005.1.1.7 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.67 46.0 2.91e-01 100.0% 14.6%
4341865 4325.1.1.1 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.66 56.0 5.47e-01 100.0% 87.3%
4449682 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.66 56.0 4.47e-01 100.0% 84.8%
4063892 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.66 53.0 4.07e-01 95.8% 39.2%
4351616 220.1.1.10 beta barrels › PH domain-like › PH domain-like › PH domain-like › SSrecog 0.66 45.0 3.42e-01 72.9% 64.2%
4576632 2485.1.1.6 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › FHIPEP 0.66 55.0 4.37e-01 100.0% 84.5%
3968393 2485.1.1.6 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › FHIPEP 0.66 56.0 4.43e-01 100.0% 85.5%
3753029 221.15.1.0 a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase 0.66 48.0 5.11e-01 81.2% 92.5%
4052313 2484.1.1.10 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD 0.66 54.0 4.29e-01 95.8% 47.6%
168348 2485.1.1.37 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_2 0.65 49.0 4.05e-01 87.5% 97.9%
3631797 5.1.4.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.64 50.0 3.06e-01 87.5% 18.4%
3617732 5.1.4.48 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.64 49.0 2.88e-01 85.4% 33.8%
3990622 3075.1.1.1 a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › PFU 0.64 44.0 3.96e-01 72.9% 87.1%
3632320 220.1.1.10 beta barrels › PH domain-like › PH domain-like › PH domain-like › SSrecog 0.63 46.0 3.51e-01 79.2% 69.6%
3969928 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.62 47.0 5.08e-01 95.8% 100.0%
2897753 220.1.1.10 beta barrels › PH domain-like › PH domain-like › PH domain-like › SSrecog 0.62 46.0 3.92e-01 79.2% 84.4%
5047657 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 49.0 4.78e-01 93.8% 92.7%
5008130 213.1.1.35 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_CG 0.61 41.0 3.34e-01 70.8% 56.8%
4030804 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.61 48.0 3.12e-01 100.0% 17.9%
5000800 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.61 47.0 3.96e-01 85.4% 49.4%
2879522 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.61 44.0 3.72e-01 83.3% 76.1%
4971298 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.61 45.0 4.01e-01 93.8% 54.7%
4012965 4351.1.1.0 alpha arrays › ATP12-like › ATP12-like › ATP12-like 0.60 50.0 3.26e-01 100.0% 19.9%
3992789 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.60 51.0 4.12e-01 97.9% 81.1%
2516891 2002.1.1.134 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 0.60 48.0 2.89e-01 93.8% 29.5%
3811472 2003.1.2.103 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Prenylcys_lyase, NAD_binding_8 0.59 52.0 3.11e-01 100.0% 97.0%
4484289 633.23.1.9 alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.59 49.0 3.30e-01 93.8% 72.1%
380523 219.1.1.9 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C12 0.59 46.0 3.18e-01 95.8% 68.4%
3515993 220.1.1.13 beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.59 50.0 3.71e-01 93.8% 80.0%
3941091 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.59 47.0 3.55e-01 95.8% 83.6%
5022340 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 40.0 3.61e-01 72.9% 61.4%
3951116 206.1.3.7 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp 0.59 48.0 3.07e-01 100.0% 19.5%
3748299 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 44.0 4.23e-01 95.8% 72.7%
3275592 206.1.3.7 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp 0.58 47.0 2.96e-01 100.0% 17.9%
3740019 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.58 48.0 3.76e-01 100.0% 71.7%
4116848 2003.1.2.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.57 50.0 2.96e-01 100.0% 84.9%
4973040 3407.1.1.0 mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.57 48.0 4.01e-01 95.8% 95.3%
4934918 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.57 41.0 3.62e-01 91.7% 52.9%
136748 206.1.3.7 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp 0.57 46.0 2.98e-01 100.0% 20.6%
3744304 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.57 48.0 3.66e-01 97.9% 79.2%
1348267 292.2.1.5 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Polo_box_3 0.57 43.0 3.51e-01 83.3% 65.9%
4792845 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.56 48.0 3.16e-01 97.9% 57.4%
5044314 3203.1.1.0 a+b two layers › Putative oxidoreductase › Putative oxidoreductase › Putative oxidoreductase 0.55 39.0 3.38e-01 81.2% 87.8%
3187236 5.1.4.242 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PEP5_VPS11_N 0.55 44.0 2.75e-01 100.0% 19.7%
1117622 330.1.1.7 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsRBD2 0.54 42.0 3.55e-01 97.9% 58.4%
4478409 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.54 39.0 3.68e-01 79.2% 86.7%
3708791 77.3.1.3 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN 0.54 40.0 2.66e-01 81.2% 36.2%
None 0.54 45.0 2.77e-01 100.0% 90.8%
3804439 2.1.1.23 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › POT1 0.53 41.0 3.03e-01 89.6% 88.0%
3591998 220.1.1.11 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.53 42.0 3.36e-01 93.8% 93.6%
5021241 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.53 40.0 3.53e-01 100.0% 55.7%
4669316 3439.1.1.0 a+b two layers › PafA/Dop C-terminal domain › PafA/Dop C-terminal domain › PafA/Dop C-terminal domain 0.53 45.0 4.14e-01 97.9% 90.8%
4650117 502.1.1.1 a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C 0.52 39.0 3.41e-01 83.3% 51.2%
3305034 7512.1.1.6 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 0.52 44.0 3.09e-01 100.0% 56.7%
5005203 243.6.1.9 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.50 36.0 3.23e-01 85.4% 85.0%