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IMGVR_UViG_3300014028_000116-3300014028-Ga0117810_100144811
Arc-VirIMGVR_UViG_3300014028_000116-3300014028-Ga0117810_100144811
Identity
- Kingdom:
- archaea
Quality
89.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-76
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4dt4A02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.67 | 44.0 | 4.83e-01 | 70.0% | 82.5% |
| 2kr7A02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.65 | 42.0 | 4.52e-01 | 88.6% | 80.7% |
| 1y96A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 43.0 | 4.06e-01 | 75.7% | 62.8% |
| 1y96D00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 41.0 | 3.92e-01 | 72.9% | 63.9% |
| 4ns4A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.59 | 45.0 | 3.07e-01 | 82.9% | 88.6% |
| 6vilA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.58 | 45.0 | 3.59e-01 | 84.3% | 97.2% |
| 4i86A00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.58 | 43.0 | 3.82e-01 | 80.0% | 66.7% |
| 3voqA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 36.0 | 3.15e-01 | 77.1% | 37.9% |
| 3ceyB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 41.0 | 3.28e-01 | 74.3% | 63.8% |
| 5os9A00 | 2.40.330.10 | Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain | 0.57 | 41.0 | 3.51e-01 | 75.7% | 61.7% |
| 6mzoA01 | 3.40.50.11970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 40.0 | 3.33e-01 | 74.3% | 40.5% |
| 2vqeL00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 39.0 | 3.30e-01 | 72.9% | 69.4% |
| 3kl9A02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.57 | 43.0 | 4.27e-01 | 81.4% | 79.7% |
| 2xk0A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 38.0 | 3.87e-01 | 70.0% | 72.5% |
| 3tw8A01 | 3.30.450.200 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module | 0.56 | 43.0 | 3.47e-01 | 82.9% | 79.7% |
| 3q63F00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 46.0 | 3.71e-01 | 91.4% | 66.9% |
| 3tfiA00 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.56 | 39.0 | 2.49e-01 | 74.3% | 48.2% |
| 2b5eA02 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 38.0 | 3.42e-01 | 71.4% | 72.2% |
| 4h75A00 | 2.80.10.70 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty | 0.54 | 46.0 | 3.42e-01 | 98.6% | 55.8% |
| 4c92B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 41.0 | 3.62e-01 | 91.4% | 55.2% |
| 4lduA02 | 2.40.330.10 | Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain | 0.53 | 40.0 | 3.49e-01 | 80.0% | 71.7% |
| 7cu8E01 | 3.40.1000.70 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain | 0.53 | 45.0 | 3.34e-01 | 95.7% | 65.4% |
| 2vf9A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.53 | 38.0 | 3.14e-01 | 77.1% | 61.1% |
| 5mkiH00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 37.0 | 3.72e-01 | 74.3% | 73.2% |
| 1vx2I02 | 3.10.290.70 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › | 0.52 | 35.0 | 3.07e-01 | 71.4% | 78.8% |
| 3e07A00 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.51 | 34.0 | 3.25e-01 | 71.4% | 100.0% |
| 3rmuA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 34.0 | 2.82e-01 | 81.4% | 36.6% |
| 3gxwC00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.50 | 35.0 | 3.17e-01 | 74.3% | 64.0% |
| 1q90C00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.50 | 38.0 | 3.28e-01 | 87.1% | 87.3% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3747392 | 4.1.1.31 ↗ | beta barrels › SH3 › SH3 › SH3 › Spin-Ssty | 0.71 | 48.0 | 5.01e-01 | 90.0% | 75.4% |
| 4505321 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.70 | 45.0 | 4.98e-01 | 71.4% | 83.6% |
| 4981303 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.69 | 44.0 | 4.86e-01 | 71.4% | 81.8% |
| 3941391 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 46.0 | 4.88e-01 | 74.3% | 81.7% |
| 3263053 | 1.1.9.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 | 0.67 | 46.0 | 4.64e-01 | 74.3% | 71.4% |
| 4293453 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 43.0 | 4.14e-01 | 74.3% | 57.5% |
| 3839955 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.67 | 41.0 | 4.60e-01 | 71.4% | 80.0% |
| 2528374 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.67 | 44.0 | 4.31e-01 | 70.0% | 62.3% |
| 5004368 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.67 | 43.0 | 4.76e-01 | 71.4% | 85.5% |
| 4006301 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.66 | 44.0 | 4.84e-01 | 70.0% | 87.3% |
| 5033424 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.65 | 44.0 | 4.74e-01 | 91.4% | 81.7% |
| 5064515 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.64 | 41.0 | 4.42e-01 | 71.4% | 76.7% |
| 4929472 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 45.0 | 4.34e-01 | 74.3% | 66.3% |
| 3959772 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.63 | 50.0 | 3.79e-01 | 85.7% | 61.2% |
| 4950522 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.63 | 40.0 | 4.44e-01 | 71.4% | 83.6% |
| 3387378 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.63 | 47.0 | 4.47e-01 | 81.4% | 67.1% |
| 3971321 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.63 | 43.0 | 4.39e-01 | 72.9% | 72.5% |
| 1175750 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.63 | 42.0 | 4.07e-01 | 74.3% | 62.3% |
| 3251414 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 48.0 | 4.15e-01 | 84.3% | 56.4% |
| 5036381 | 284.4.1.1 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_IF | 0.62 | 42.0 | 4.54e-01 | 95.7% | 83.3% |
| 3451171 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 39.0 | 4.09e-01 | 87.1% | 72.3% |
| 3936053 | 4.1.1.71 ↗ | beta barrels › SH3 › SH3 › SH3 › Gemin7 | 0.58 | 41.0 | 4.15e-01 | 74.3% | 74.3% |
| 5012286 | 284.4.1.1 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_IF | 0.57 | 39.0 | 4.22e-01 | 95.7% | 83.3% |
| 4098502 | 286.1.1.4 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase | 0.57 | 43.0 | 3.17e-01 | 81.4% | 76.8% |
| 3227009 | 4.1.1.71 ↗ | beta barrels › SH3 › SH3 › SH3 › Gemin7 | 0.57 | 39.0 | 3.91e-01 | 74.3% | 73.3% |
| 3744940 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.56 | 40.0 | 4.28e-01 | 84.3% | 90.0% |
| 4975808 | 1.1.7.22 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_M42 | 0.56 | 42.0 | 3.89e-01 | 80.0% | 87.8% |
| 4228570 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 42.0 | 4.10e-01 | 88.6% | 72.5% |
| 3660188 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.56 | 46.0 | 4.61e-01 | 98.6% | 97.1% |
| 3603956 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.55 | 39.0 | 2.76e-01 | 75.7% | 67.2% |
| 4135073 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.55 | 39.0 | 2.73e-01 | 78.6% | 36.3% |
| 3268048 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.55 | 40.0 | 4.24e-01 | 77.1% | 95.0% |
| 3965931 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.54 | 38.0 | 3.30e-01 | 74.3% | 89.1% |
| 3484822 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.54 | 38.0 | 3.66e-01 | 91.4% | 65.0% |
| 4106867 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.54 | 37.0 | 3.02e-01 | 72.9% | 57.1% |
| 3997872 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 30.0 | 3.64e-01 | 72.9% | 100.0% |
| 3987793 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.54 | 37.0 | 2.96e-01 | 74.3% | 37.6% |
| 3646946 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.53 | 39.0 | 3.54e-01 | 80.0% | 69.7% |
| 3479101 | 241.6.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits | 0.52 | 37.0 | 3.22e-01 | 87.1% | 45.0% |
| 167222 | 391.1.1.1 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › fn1 | 0.52 | 38.0 | 4.03e-01 | 78.6% | 95.1% |
| 3951679 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 42.0 | 2.99e-01 | 97.1% | 79.6% |
| 3615163 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.50 | 34.0 | 2.94e-01 | 70.0% | 66.4% |