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IMGVR_UViG_3300014039_000036-3300014039-Ga0116646_100011711
Arc-VirIMGVR_UViG_3300014039_000036-3300014039-Ga0116646_100011711
Identity
- Kingdom:
- archaea
Quality
82.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-92
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7ymiD01 | 1.20.85.10 | Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like | 0.70 | 49.0 | 3.88e-01 | 72.2% | 78.3% |
| 2ddhA04 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.69 | 55.0 | 4.82e-01 | 85.6% | 62.1% |
| 2p7vA00 | 1.20.120.1370 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Regulator of RNA polymerase sigma(70) subunit, domain 4 | 0.68 | 54.0 | 4.47e-01 | 83.3% | 90.1% |
| 3clhA02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.66 | 43.0 | 3.60e-01 | 72.2% | 39.6% |
| 4q4hA01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.65 | 44.0 | 3.04e-01 | 70.0% | 88.4% |
| 3n71A03 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.62 | 43.0 | 3.28e-01 | 71.1% | 42.3% |
| 3ed5A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.55 | 37.0 | 3.89e-01 | 73.3% | 75.0% |
| 6vw7B03 | 1.20.1440.230 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain | 0.55 | 39.0 | 4.05e-01 | 80.0% | 78.6% |
| 1ylmA00 | 1.20.120.580 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like | 0.55 | 47.0 | 4.11e-01 | 96.7% | 66.2% |
| 3ciaA03 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.53 | 41.0 | 3.40e-01 | 81.1% | 84.5% |
| 2qgsB01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.53 | 37.0 | 3.79e-01 | 82.2% | 75.0% |
| 1d9cA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.51 | 43.0 | 3.95e-01 | 93.3% | 80.2% |
| 3fblA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 37.0 | 3.87e-01 | 75.6% | 89.0% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5030702 | 601.7.1.3 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › PaREP1 | 0.68 | 47.0 | 4.24e-01 | 71.1% | 68.8% |
| 4033628 | 603.1.1.29 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF1361 | 0.67 | 54.0 | 4.31e-01 | 86.7% | 95.4% |
| 4491397 | 3843.1.1.1 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › Oxidored_q2 | 0.65 | 45.0 | 4.58e-01 | 71.1% | 75.3% |
| 3576603 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.61 | 40.0 | 4.43e-01 | 71.1% | 81.3% |
| 4801091 | 139.1.1.3 ↗ | few secondary structure elements › Multiheme cytochromes › Cytochrome c3-like › Cytochrome c3-like › Paired_CXXCH_1 | 0.61 | 53.0 | 3.85e-01 | 97.8% | 82.4% |
| 3507576 | 150.5.1.72 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › LptF_LptG | 0.60 | 42.0 | 3.80e-01 | 71.1% | 95.0% |
| 4025307 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.58 | 41.0 | 3.36e-01 | 73.3% | 53.3% |
| 4975227 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 40.0 | 3.60e-01 | 82.2% | 53.8% |
| 3678469 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 45.0 | 2.80e-01 | 98.9% | 55.2% |