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IMGVR_UViG_3300014203_000140-3300014203-Ga0172378_1000130211

Arc-Vir

IMGVR_UViG_3300014203_000140-3300014203-Ga0172378_1000130211

Quality

77.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-74
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ifqB00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.81 56.0 4.59e-01 86.3% 41.4%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.78 57.0 4.86e-01 82.2% 48.3%
4p6zM01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.77 52.0 4.34e-01 80.8% 42.1%
2j3tD01 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.74 54.0 4.34e-01 82.2% 41.8%
5kolD00 3.90.950.20 Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like 0.72 51.0 3.88e-01 74.0% 36.0%
2dmwA01 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.71 53.0 4.52e-01 84.9% 50.0%
3f6gA01 3.30.160.740 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.70 49.0 5.38e-01 74.0% 91.4%
2ywqA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.69 48.0 4.58e-01 74.0% 61.4%
1wp1B01 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.69 58.0 3.64e-01 91.8% 60.9%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.68 50.0 5.05e-01 79.5% 80.3%
3a32A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.68 48.0 3.82e-01 74.0% 39.0%
1bf3A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.67 52.0 3.62e-01 83.6% 97.1%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 39.0 4.23e-01 71.2% 70.5%
2gnxA02 3.30.450.240 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.65 44.0 3.88e-01 78.1% 46.8%
2leqA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.65 48.0 3.82e-01 78.1% 98.6%
4ktwA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.64 48.0 3.73e-01 79.5% 36.3%
1oo0A00 3.30.1560.10 Alpha Beta › 2-Layer Sandwich › Mago nashi protein › Mago nashi 0.64 44.0 3.50e-01 71.2% 93.8%
1k8kC00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 44.0 2.79e-01 71.2% 17.8%
5bncA02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.62 42.0 3.89e-01 75.3% 54.8%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 45.0 4.51e-01 80.8% 75.7%
4qt4A00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.62 43.0 3.23e-01 72.6% 88.4%
1u5kA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 42.0 4.05e-01 71.2% 62.2%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 42.0 3.51e-01 100.0% 43.6%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.61 45.0 3.66e-01 79.5% 88.3%
2f9iC00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.61 45.0 3.03e-01 79.5% 80.5%
2rqlA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.61 47.0 4.34e-01 83.6% 71.6%
4mt4A00 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.60 53.0 3.16e-01 93.2% 34.7%
1eovA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 41.0 3.34e-01 71.2% 44.0%
1l0wA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 41.0 3.59e-01 71.2% 49.1%
3amuA02 2.40.50.1010 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 41.0 3.32e-01 71.2% 44.1%
6l4qB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 40.0 3.30e-01 71.2% 43.7%
4up7A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 41.0 3.18e-01 71.2% 38.2%
2pn2A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.58 46.0 3.82e-01 97.3% 46.7%
3wxmB02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.58 44.0 3.74e-01 84.9% 48.4%
6u5vB07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.57 38.0 3.19e-01 82.2% 38.8%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 34.0 2.82e-01 75.3% 32.6%
2xgtB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 39.0 3.53e-01 71.2% 52.5%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 41.0 3.47e-01 80.8% 46.0%
3sreA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 38.0 2.52e-01 72.6% 24.6%
4rzkA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 35.0 3.41e-01 71.2% 55.2%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.55 37.0 3.02e-01 78.1% 34.4%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.53 39.0 3.43e-01 79.5% 54.4%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.53 39.0 3.29e-01 78.1% 47.5%
3gdoA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 42.0 3.02e-01 84.9% 97.5%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 38.0 3.23e-01 76.7% 86.9%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.53 34.0 3.33e-01 72.6% 58.7%
6rarI02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 37.0 3.54e-01 78.1% 74.2%
1ntvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 42.0 3.31e-01 90.4% 74.3%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 36.0 3.06e-01 78.1% 55.6%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4978622 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.81 57.0 5.11e-01 87.7% 54.0%
4978284 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.78 55.0 4.61e-01 87.7% 45.0%
4034138 7520.1.1.0 a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like 0.77 55.0 4.50e-01 78.1% 41.4%
3620870 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.77 53.0 4.79e-01 86.3% 53.0%
5045235 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.76 56.0 4.55e-01 91.8% 43.1%
3630103 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.75 53.0 4.34e-01 74.0% 47.7%
3728783 223.2.1.15 a+b three layers › Profilin-like › profilin-like › profilin-like › Longin 0.75 54.0 4.30e-01 80.8% 39.3%
5052141 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.73 54.0 4.24e-01 87.7% 38.0%
4947581 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.73 54.0 4.75e-01 87.7% 52.7%
3933098 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.72 46.0 4.84e-01 83.6% 73.8%
5050909 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.71 52.0 4.26e-01 83.6% 43.1%
3164102 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.71 42.0 5.02e-01 72.6% 95.6%
4997139 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 51.0 4.17e-01 82.2% 41.5%
3403381 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.70 46.0 4.16e-01 80.8% 49.0%
4947055 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 53.0 4.30e-01 86.3% 42.9%
3248413 223.2.1.1 a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.70 50.0 4.05e-01 80.8% 40.7%
5050640 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 55.0 4.56e-01 87.7% 100.0%
5075279 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 52.0 4.52e-01 86.3% 52.2%
5001238 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 50.0 4.36e-01 80.8% 51.8%
3709800 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.68 48.0 4.44e-01 83.6% 57.9%
4946434 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.67 46.0 3.76e-01 75.3% 40.0%
4932452 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 46.0 4.21e-01 71.2% 60.0%
5079725 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 46.0 4.97e-01 78.1% 86.7%
3796100 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.67 57.0 4.47e-01 91.8% 79.3%
5078358 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.65 42.0 3.55e-01 71.2% 40.3%
3408369 284.1.3.4 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK 0.64 41.0 4.09e-01 75.3% 62.7%
5057683 2484.1.1.38 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 0.64 48.0 4.02e-01 83.6% 47.2%
3792405 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.63 54.0 3.21e-01 91.8% 23.6%
4941125 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 43.0 3.68e-01 71.2% 50.4%
5046829 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.62 42.0 3.45e-01 71.2% 43.7%
5053650 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.62 42.0 3.51e-01 71.2% 44.8%
4956522 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 42.0 3.62e-01 71.2% 46.1%
4028791 252.2.1.1 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.61 42.0 4.66e-01 71.2% 96.4%
4012836 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 42.0 3.29e-01 71.2% 40.7%
4027686 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.61 44.0 4.95e-01 76.7% 100.0%
4993340 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.60 41.0 3.77e-01 71.2% 57.1%
3271779 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 52.0 4.12e-01 94.5% 78.6%
4997639 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 47.0 4.09e-01 83.6% 72.4%
4027687 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.59 40.0 4.40e-01 72.6% 94.5%
3925367 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 40.0 3.18e-01 93.2% 35.3%
None 0.58 39.0 2.60e-01 71.2% 28.1%
3882163 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 41.0 2.86e-01 76.7% 23.1%
3471801 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 45.0 3.66e-01 93.2% 45.9%
3591633 1021.1.1.0 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.56 43.0 3.66e-01 83.6% 53.6%
5076734 2004.1.1.164 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Roc 0.55 43.0 3.22e-01 82.2% 87.8%
3176969 224.1.1.1 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.55 38.0 3.25e-01 72.6% 84.2%
3576281 391.1.2.1 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC 0.55 35.0 3.63e-01 97.3% 72.3%
3907752 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 37.0 3.32e-01 71.2% 53.3%
4430771 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 43.0 3.49e-01 90.4% 67.6%
3495619 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.53 39.0 3.44e-01 78.1% 85.5%
3173631 883.1.1.22 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › PF26547 0.53 42.0 3.00e-01 86.3% 47.9%
3642424 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.52 42.0 2.75e-01 87.7% 95.1%
3996656 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.51 38.0 2.84e-01 78.1% 98.9%