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IMGVR_UViG_3300014203_001741-3300014203-Ga0172378_100238046
Arc-VirIMGVR_UViG_3300014203_001741-3300014203-Ga0172378_100238046
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-142
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06199.18 best | Phage_tail_2 | 27.4 | 4.40e-06 | 93.9% | 72.7% |
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1k28D03 | 2.40.30.150 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 | 0.69 | 47.0 | 5.49e-01 | 94.7% | 97.9% |
| 4divV01 | 2.40.30.200 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.66 | 58.0 | 5.80e-01 | 100.0% | 92.7% |
| 2bj3D02 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.65 | 31.0 | 3.88e-01 | 78.8% | 72.8% |
| 1shyA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.64 | 41.0 | 4.59e-01 | 100.0% | 83.3% |
| 4ci2B02 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.62 | 43.0 | 4.46e-01 | 93.9% | 75.2% |
| 2gysA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 36.0 | 4.40e-01 | 87.1% | 91.9% |
| 2ptfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.60 | 51.0 | 4.91e-01 | 100.0% | 80.3% |
| 3q0bX00 | 2.30.280.10 | Mainly Beta › Roll › PUA domain-like › SRA-YDG | 0.59 | 53.0 | 5.16e-01 | 97.0% | 98.6% |
| 2kvoA01 | 2.40.30.220 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Photosystem II Psb28 | 0.59 | 40.0 | 4.36e-01 | 100.0% | 86.5% |
| 1lp9E02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 32.0 | 3.93e-01 | 86.4% | 87.5% |
| 2pb7A01 | 2.30.280.10 | Mainly Beta › Roll › PUA domain-like › SRA-YDG | 0.56 | 49.0 | 4.44e-01 | 93.2% | 88.7% |
| 3bpkA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.56 | 52.0 | 4.69e-01 | 100.0% | 74.3% |
| 2p5zX01 | 2.30.110.50 | Mainly Beta › Roll › Pnp Oxidase; Chain A › | 0.56 | 47.0 | 4.37e-01 | 100.0% | 71.7% |
| 5mmjj00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.53 | 35.0 | 3.89e-01 | 76.5% | 86.9% |
| 2ausC02 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.53 | 35.0 | 3.13e-01 | 83.3% | 45.3% |
| 5bncB01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 43.0 | 4.15e-01 | 100.0% | 77.9% |
| 2gjvA00 | 3.30.2000.10 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like | 0.52 | 45.0 | 4.47e-01 | 97.7% | 90.4% |
| 2l25A00 | 3.30.2000.20 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.51 | 43.0 | 4.26e-01 | 91.7% | 92.2% |
| 1sqeA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 28.0 | 3.16e-01 | 79.5% | 68.3% |
| 1twfB07 | 2.40.50.150 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain | 0.51 | 39.0 | 4.02e-01 | 80.3% | 94.4% |
| 4fomA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 35.0 | 4.02e-01 | 87.1% | 96.0% |
| 4uhvA01 | 2.30.110.50 | Mainly Beta › Roll › Pnp Oxidase; Chain A › | 0.50 | 46.0 | 4.03e-01 | 99.2% | 68.7% |
| 4hudA01 | 3.30.2000.40 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser | 0.50 | 46.0 | 3.94e-01 | 100.0% | 82.9% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4929634 | 1.1.5.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 | 0.87 | 72.0 | 5.50e-01 | 99.2% | 41.9% |
| 2642579 | 1.1.13.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 | 0.87 | 77.0 | 7.84e-01 | 100.0% | 94.6% |
| 4157825 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.86 | 78.0 | 7.90e-01 | 100.0% | 95.4% |
| 2595159 | 1.1.13.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 | 0.82 | 78.0 | 7.12e-01 | 100.0% | 79.5% |
| 2674670 | 1.1.13.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 | 0.81 | 76.0 | 6.84e-01 | 100.0% | 75.6% |
| 5082881 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.81 | 72.0 | 7.46e-01 | 99.2% | 99.2% |
| 4957560 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.78 | 70.0 | 7.07e-01 | 100.0% | 95.4% |
| 4888726 | 1.1.13.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 | 0.78 | 73.0 | 6.75e-01 | 100.0% | 81.7% |
| 4988100 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.77 | 67.0 | 6.97e-01 | 100.0% | 98.4% |
| 4954552 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.77 | 72.0 | 6.68e-01 | 100.0% | 93.8% |
| 5083300 | 1.1.13.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 | 0.75 | 71.0 | 6.83e-01 | 100.0% | 93.8% |
| 3942090 | 1.1.5.77 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube | 0.74 | 68.0 | 6.24e-01 | 100.0% | 77.6% |
| 4873215 | 1.1.13.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2001 | 0.74 | 65.0 | 6.36e-01 | 100.0% | 88.6% |
| 3967003 | 1.1.13.35 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_TTP_11 | 0.72 | 68.0 | 6.69e-01 | 100.0% | 94.3% |
| 4057590 | 1.1.5.86 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN3 | 0.70 | 48.0 | 4.78e-01 | 100.0% | 67.1% |
| 3590380 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.69 | 64.0 | 5.76e-01 | 100.0% | 82.2% |
| 5002750 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.69 | 51.0 | 5.63e-01 | 93.9% | 96.2% |
| 4034209 | 1.1.13.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail | 0.68 | 61.0 | 6.11e-01 | 96.2% | 99.3% |
| 3965192 | 1.1.13.67 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2460 | 0.68 | 55.0 | 5.92e-01 | 94.7% | 100.0% |
| 3511358 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.67 | 48.0 | 5.38e-01 | 93.9% | 96.0% |
| 4036849 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.67 | 49.0 | 4.92e-01 | 100.0% | 74.4% |
| 1117606 | 1.1.13.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_N | 0.67 | 59.0 | 5.94e-01 | 96.2% | 97.8% |
| 1444177 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.66 | 58.0 | 5.80e-01 | 99.2% | 91.9% |
| 4033579 | 1.1.13.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail | 0.65 | 58.0 | 5.92e-01 | 96.2% | 100.0% |
| 184986 | 1.1.13.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail | 0.63 | 54.0 | 5.60e-01 | 97.7% | 98.4% |
| 4888732 | 1.1.13.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail | 0.63 | 56.0 | 5.30e-01 | 100.0% | 81.4% |
| 5004559 | 1.1.13.75 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › CIS_tube | 0.62 | 56.0 | 5.56e-01 | 97.0% | 100.0% |
| 3964568 | 809.1.1.0 ↗ | a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP | 0.62 | 28.0 | 3.36e-01 | 81.8% | 62.4% |
| 3111928 | 3114.1.1.3 ↗ | beta sandwiches › Mucin-binding protein domain › Mucin-binding protein domain › Mucin-binding protein domain › Muc_B2 | 0.59 | 29.0 | 3.21e-01 | 83.3% | 57.4% |
| 3964308 | 1.1.13.37 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2163 | 0.57 | 50.0 | 4.97e-01 | 95.5% | 91.1% |
| 5021621 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.53 | 44.0 | 4.43e-01 | 100.0% | 88.9% |
| 4444321 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.51 | 45.0 | 3.85e-01 | 97.0% | 80.5% |
| 4591715 | 304.102.1.5 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,DKCLD,TruB_C_2 | 0.51 | 35.0 | 2.98e-01 | 82.6% | 40.4% |
| 4077036 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.51 | 36.0 | 3.04e-01 | 82.6% | 42.2% |
| 5001314 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.50 | 36.0 | 2.95e-01 | 73.5% | 63.3% |