←Back to structures

IMGVR_UViG_3300014204_003600-3300014204-Ga0172381_100303731

Arc-Vir

IMGVR_UViG_3300014204_003600-3300014204-Ga0172381_100303731

Identity

Kingdom:
archaea

Quality

83.8 mean pLDDT

Cluster

View cluster (29 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-53
PDB
Domain cluster: representative
D2 high residues 69-283
PDB
Domain cluster: rep: IMGVR_UViG_3300010237_000006-3300010237-Ga0136250_1000002017__D103-269
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dkwA00 3.30.420.280 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.84 66.0 6.99e-01 100.0% 89.2%
2wbnA00 3.30.420.280 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.81 64.0 7.04e-01 100.0% 97.2%
1kcfB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.59 49.0 4.78e-01 94.0% 80.3%
1p5jA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 24.0 3.42e-01 96.7% 79.2%
3d3lA02 3.10.450.60 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 19.0 3.21e-01 77.2% 83.7%
3oj0A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 27.0 3.37e-01 92.6% 74.6%
1yvuA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 39.0 4.00e-01 77.2% 99.1%
3jr7A03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.51 30.0 3.77e-01 90.7% 97.6%
1iirA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.51 26.0 2.98e-01 75.8% 63.4%
2f96A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 43.0 4.44e-01 94.9% 95.0%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5081671 2484.1.1.76 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_3C 0.87 67.0 7.37e-01 100.0% 93.3%
2125479 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.87 69.0 7.26e-01 100.0% 88.8%
3942673 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.84 68.0 7.25e-01 100.0% 93.2%
185684 2484.1.1.77 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.84 66.0 6.99e-01 100.0% 89.2%
3964959 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.81 65.0 7.04e-01 100.0% 95.1%
3964372 2484.1.1.77 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.78 60.0 6.28e-01 100.0% 86.7%
5002634 2484.1.1.77 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.77 61.0 6.69e-01 100.0% 97.2%
5080207 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.70 61.0 6.35e-01 100.0% 96.5%
3944867 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.68 63.0 6.35e-01 100.0% 96.3%
4185827 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.66 35.0 4.74e-01 87.9% 99.1%
3978199 2484.1.1.248 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › GpA_nuclease 0.65 61.0 5.92e-01 100.0% 92.9%
4571749 2484.1.1.25 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.64 45.0 5.11e-01 93.5% 93.3%
3166064 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 60.0 5.98e-01 100.0% 97.3%
3426629 2484.1.1.110 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE 0.57 28.0 3.37e-01 92.6% 67.3%
4946189 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.56 20.0 3.08e-01 87.9% 76.5%
3507332 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.55 36.0 4.36e-01 75.8% 99.3%
4237828 2484.1.1.41 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK 0.55 42.0 4.39e-01 93.5% 86.2%
4933551 2484.1.1.101 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.55 34.0 3.98e-01 78.6% 87.8%
3466857 2484.1.1.110 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE 0.54 39.0 3.96e-01 80.0% 72.6%
3976937 2484.1.1.178 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA+FtsA 0.53 47.0 3.80e-01 94.0% 95.7%
4429348 2484.1.1.311 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA, DDR, FtsA 0.53 47.0 3.75e-01 94.0% 93.3%
3164004 2484.1.1.245 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA, PilM_2, FtsA 0.52 45.0 3.72e-01 94.0% 98.5%
3328380 2484.1.1.110 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE 0.51 36.0 3.83e-01 80.9% 78.5%
4954298 504.1.1.0 ↗ a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.51 21.0 3.07e-01 71.6% 84.2%
3425995 7512.1.1.1 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDPGT 0.51 27.0 3.20e-01 76.3% 72.0%