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IMGVR_UViG_3300014490_000015-3300014490-Ga0182010_100081257

Arc-Vir

IMGVR_UViG_3300014490_000015-3300014490-Ga0182010_100081257

Identity

Kingdom:
archaea

Quality

90.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-86
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vctA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.86 68.0 5.51e-01 91.9% 47.7%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.85 75.0 6.01e-01 96.8% 53.0%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.82 66.0 6.12e-01 88.7% 76.9%
1yf2A02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.80 69.0 5.75e-01 96.8% 72.0%
3tklB01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 56.0 5.68e-01 77.4% 79.0%
1vp7A00 1.10.287.1040 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Exonuclease VII, small subunit 0.77 68.0 6.62e-01 96.8% 88.2%
1v4aA01 1.10.4050.10 Mainly Alpha › Orthogonal Bundle › Nucleotidyltransferase substrate binding subunit/domain fold › Glutamine synthase adenylyltransferase GlnE 0.77 51.0 4.21e-01 83.9% 39.4%
6yz2A01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.76 60.0 4.76e-01 83.9% 44.2%
3lnnB03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.76 58.0 5.68e-01 83.9% 74.6%
5ffdA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.76 55.0 4.23e-01 77.4% 35.8%
3layF00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.75 59.0 5.45e-01 90.3% 66.7%
7ymiD01 1.20.85.10 Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like 0.75 57.0 4.02e-01 80.6% 56.7%
4nsmA00 6.10.250.2770 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.74 58.0 5.57e-01 88.7% 73.2%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.74 54.0 5.55e-01 77.4% 84.5%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 57.0 5.37e-01 85.5% 71.1%
2qf9A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.73 54.0 4.01e-01 79.0% 31.4%
3behB01 1.20.120.540 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels 0.72 58.0 4.69e-01 90.3% 46.2%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.72 52.0 4.89e-01 75.8% 63.5%
3spcA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.72 54.0 4.20e-01 79.0% 76.4%
1wpaA01 6.10.140.340 Special › Helix non-globular › Helix Hairpins › 0.72 59.0 4.98e-01 88.7% 83.8%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.71 59.0 5.11e-01 95.2% 59.2%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.68 57.0 5.21e-01 100.0% 72.7%
4aifA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.64 44.0 3.42e-01 72.6% 31.9%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3535653 633.16.1.4 ↗ alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like › SOAR 0.92 67.0 5.19e-01 75.8% 39.2%
3264876 604.12.1.42 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DUF202 0.86 64.0 5.39e-01 79.0% 49.0%
3253283 192.5.1.14 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1_TOCA 0.85 75.0 6.43e-01 95.2% 63.2%
3696767 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.84 75.0 4.51e-01 98.4% 15.5%
3428852 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.82 73.0 5.68e-01 100.0% 48.9%
3436926 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 75.0 7.05e-01 100.0% 83.8%
3962991 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.82 75.0 5.16e-01 100.0% 31.8%
3864054 192.10.1.0 ↗ alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain 0.80 73.0 5.72e-01 100.0% 52.0%
3594586 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.80 71.0 6.10e-01 100.0% 63.2%
5056427 3843.1.1.38 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › T4SS_pilin 0.80 66.0 5.49e-01 93.5% 51.8%
3608012 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.80 66.0 5.88e-01 88.7% 67.1%
3386973 5086.1.1.84 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND 0.79 70.0 6.19e-01 98.4% 72.2%
3801248 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.79 65.0 4.65e-01 90.3% 31.7%
4349607 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.78 70.0 5.75e-01 100.0% 55.5%
5005097 3710.1.1.0 ↗ alpha bundles › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain 0.78 70.0 5.44e-01 100.0% 47.4%
3283657 4177.1.1.142 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › WXG100 0.78 68.0 4.69e-01 100.0% 29.3%
3607086 4992.1.1.0 ↗ extended segments › RelB-like › RelB-like › RelB-like 0.77 66.0 6.04e-01 93.5% 73.8%
5029140 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.75 59.0 5.17e-01 83.9% 61.1%
4300897 5094.1.1.1 ↗ a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › OmpH 0.75 66.0 5.22e-01 100.0% 48.5%
4166693 7013.1.1.1 ↗ alpha bundles › Ribosome assembly factor Efg1-like › Ribosome assembly factor Efg1-like › Ribosome assembly factor Efg1-like › Efg1 0.75 66.0 4.64e-01 96.8% 32.4%
3223800 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.74 60.0 4.55e-01 91.9% 36.8%
5016147 4323.1.1.0 ↗ alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C 0.71 61.0 4.68e-01 93.5% 43.0%
4387547 7013.1.1.1 ↗ alpha bundles › Ribosome assembly factor Efg1-like › Ribosome assembly factor Efg1-like › Ribosome assembly factor Efg1-like › Efg1 0.71 63.0 4.47e-01 100.0% 65.3%
4528712 109.4.1.3083 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29810 0.70 57.0 3.75e-01 91.9% 25.2%