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IMGVR_UViG_3300014491_000362-3300014491-Ga0182014_100193423
Arc-VirIMGVR_UViG_3300014491_000362-3300014491-Ga0182014_100193423
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-178
Domain cluster:
rep: MZ501264.1__QZA70128.1__274BB002_59__00058__D5-186
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01612.27 best | DNA_pol_A_exo1 | 80.7 | 1.70e-22 | 85.2% | 82.7% |
D2
high
residues 194-279
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6vddA02 | 1.20.1060.10 | Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 | 0.76 | 68.0 | 6.13e-01 | 100.0% | 71.3% |
| 2jugA01 | 1.10.10.1830 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Non-ribosomal peptide synthase, adenylation domain | 0.54 | 30.0 | 3.56e-01 | 90.7% | 83.6% |
| 3e99A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 36.0 | 2.98e-01 | 72.1% | 46.6% |
| 1jm6B02 | 1.20.140.20 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Alpha-ketoacid/pyruvate dehydrogenase kinase, N-terminal domain | 0.51 | 45.0 | 3.73e-01 | 100.0% | 71.3% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4027632 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.88 | 77.0 | 6.75e-01 | 100.0% | 65.8% |
| 4975019 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.84 | 77.0 | 6.30e-01 | 100.0% | 57.2% |
| 3279609 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.84 | 67.0 | 5.38e-01 | 100.0% | 45.6% |
| 3273774 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.74 | 68.0 | 5.71e-01 | 100.0% | 65.0% |
| 3623562 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 41.0 | 2.48e-01 | 80.2% | 33.8% |
| 3739541 | 109.4.1.353 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MOR2-PAG1_N | 0.54 | 38.0 | 2.91e-01 | 74.4% | 80.9% |
| 3430282 | 601.1.2.68 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › DUF1218 | 0.52 | 40.0 | 3.19e-01 | 81.4% | 78.2% |
| 3423775 | 601.16.1.8 ↗ | alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › DUF1218 | 0.51 | 39.0 | 3.23e-01 | 81.4% | 74.2% |
| 3802552 | 601.1.1.91 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF1218 | 0.51 | 40.0 | 3.22e-01 | 83.7% | 80.0% |
| 3935564 | 109.4.1.1414 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TTI1_C | 0.51 | 43.0 | 2.67e-01 | 94.2% | 26.2% |
| 4114693 | 5041.1.1.28 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › PF26135 | 0.51 | 36.0 | 3.91e-01 | 98.8% | 90.0% |
| 5073017 | 7573.1.1.0 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like | 0.50 | 43.0 | 3.53e-01 | 100.0% | 98.3% |
| 3228826 | 193.1.1.27 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CCDC93_N | 0.50 | 36.0 | 3.35e-01 | 79.1% | 69.2% |