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IMGVR_UViG_3300014656_005983-3300014656-Ga0180007_1001692714
Arc-VirIMGVR_UViG_3300014656_005983-3300014656-Ga0180007_1001692714
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 43-147
Domain cluster:
rep: IMGVR_UViG_3300033141_005774-3300033141-Ga0366833_10675616__D16-109
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ae2A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.67 | 52.0 | 5.62e-01 | 93.3% | 100.0% |
| 3rd4B00 | 2.40.50.660 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.67 | 49.0 | 5.38e-01 | 99.0% | 97.6% |
| 8aa9A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.67 | 57.0 | 5.54e-01 | 100.0% | 83.3% |
| 4gs3A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.67 | 52.0 | 5.60e-01 | 99.0% | 95.6% |
| 2e12A00 | 2.30.30.720 | Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) | 0.65 | 35.0 | 3.75e-01 | 96.2% | 59.1% |
| 3ikwA02 | 3.10.540.20 | Alpha Beta › Roll › duf1285 like fold › | 0.63 | 29.0 | 3.45e-01 | 96.2% | 61.4% |
| 2k5vA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.63 | 50.0 | 5.16e-01 | 100.0% | 90.8% |
| 2qw7C00 | 2.40.50.220 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml | 0.60 | 44.0 | 4.64e-01 | 93.3% | 86.3% |
| 5odnC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 50.0 | 5.08e-01 | 99.0% | 94.1% |
| 3iayA01 | 2.40.50.730 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.58 | 46.0 | 4.77e-01 | 99.0% | 90.8% |
| 1h6hA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.56 | 45.0 | 4.05e-01 | 86.7% | 84.6% |
| 2kigA00 | 2.30.29.110 | Mainly Beta › Roll › PH-domain like › | 0.55 | 38.0 | 3.33e-01 | 72.4% | 90.7% |
| 4gn2A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.54 | 37.0 | 2.85e-01 | 71.4% | 95.0% |
| 2czoA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.54 | 43.0 | 4.01e-01 | 86.7% | 96.2% |
| 1wznA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.53 | 27.0 | 3.49e-01 | 81.0% | 89.3% |
| 7x7zA01 | 2.40.480.10 | Mainly Beta › Beta Barrel › AOC barrel-like › Allene oxide cyclase-like | 0.52 | 36.0 | 3.34e-01 | 71.4% | 99.3% |
| 1gd5A00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.51 | 41.0 | 3.84e-01 | 87.6% | 96.9% |
| 2wweA01 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.51 | 41.0 | 4.12e-01 | 86.7% | 100.0% |
| 3nqzA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 30.0 | 3.27e-01 | 90.5% | 71.4% |
ECOD (59)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3508573 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.72 | 51.0 | 5.18e-01 | 100.0% | 74.3% |
| 4958552 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.72 | 46.0 | 4.51e-01 | 95.2% | 60.0% |
| 3317450 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.71 | 52.0 | 5.19e-01 | 100.0% | 73.6% |
| 4975882 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.69 | 56.0 | 5.59e-01 | 100.0% | 82.7% |
| 3444970 | 2.1.1.223 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 | 0.68 | 55.0 | 5.13e-01 | 99.0% | 69.2% |
| 4927936 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.68 | 53.0 | 5.85e-01 | 92.4% | 100.0% |
| 5062351 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.68 | 57.0 | 5.56e-01 | 100.0% | 81.7% |
| 4951392 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.68 | 54.0 | 4.78e-01 | 100.0% | 59.3% |
| 4951393 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.67 | 55.0 | 5.70e-01 | 100.0% | 91.0% |
| 3393168 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.67 | 50.0 | 4.99e-01 | 100.0% | 75.5% |
| 5041942 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.67 | 55.0 | 5.40e-01 | 100.0% | 80.9% |
| 3197575 | 2.1.1.1 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 | 0.67 | 46.0 | 4.87e-01 | 93.3% | 82.2% |
| 5064437 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.66 | 54.0 | 5.36e-01 | 100.0% | 82.7% |
| 5066014 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.66 | 57.0 | 5.08e-01 | 100.0% | 66.9% |
| 4930095 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.65 | 53.0 | 5.27e-01 | 100.0% | 82.7% |
| 3492348 | 2.1.1.25 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 | 0.65 | 50.0 | 4.52e-01 | 100.0% | 59.3% |
| 4982481 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.65 | 51.0 | 5.40e-01 | 99.0% | 92.6% |
| 197051 | 4.1.1.74 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3247 | 0.65 | 35.0 | 3.75e-01 | 96.2% | 59.1% |
| 4996041 | 2.1.1.123 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB3 | 0.64 | 56.0 | 5.34e-01 | 100.0% | 80.8% |
| 3262463 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.64 | 55.0 | 4.94e-01 | 100.0% | 68.6% |
| 4956351 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 56.0 | 3.58e-01 | 100.0% | 20.6% |
| 5020459 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 53.0 | 5.45e-01 | 99.0% | 93.9% |
| 3907754 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 49.0 | 5.36e-01 | 97.1% | 100.0% |
| 5076488 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 55.0 | 5.63e-01 | 99.0% | 97.0% |
| 4026722 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.63 | 55.0 | 5.02e-01 | 98.1% | 70.7% |
| 3350247 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.63 | 58.0 | 5.17e-01 | 99.0% | 73.8% |
| 3367063 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.63 | 58.0 | 4.36e-01 | 99.0% | 44.6% |
| 4015435 | 2.1.1.44 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 | 0.63 | 52.0 | 5.42e-01 | 99.0% | 95.8% |
| 5032200 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.63 | 55.0 | 5.58e-01 | 99.0% | 94.3% |
| 5004108 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 51.0 | 5.22e-01 | 100.0% | 92.0% |
| 5036294 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 53.0 | 5.44e-01 | 100.0% | 97.0% |
| 3882652 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 56.0 | 5.23e-01 | 100.0% | 79.2% |
| 3222288 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 55.0 | 5.33e-01 | 98.1% | 87.0% |
| 3542604 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.62 | 56.0 | 5.12e-01 | 100.0% | 76.3% |
| 3474148 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 49.0 | 4.74e-01 | 100.0% | 75.8% |
| 3375524 | 2.1.1.229 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 | 0.60 | 51.0 | 4.93e-01 | 99.0% | 80.0% |
| 4944520 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.59 | 51.0 | 3.85e-01 | 90.5% | 71.7% |
| 5076489 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.59 | 54.0 | 5.23e-01 | 100.0% | 89.6% |
| 3514098 | 2.1.1.25 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 | 0.59 | 53.0 | 5.15e-01 | 98.1% | 88.7% |
| 3666655 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 53.0 | 4.98e-01 | 100.0% | 86.4% |
| 3662669 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.57 | 52.0 | 4.62e-01 | 100.0% | 72.7% |
| 3669779 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.57 | 47.0 | 4.25e-01 | 87.6% | 92.1% |
| 3657702 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 52.0 | 4.71e-01 | 99.0% | 77.1% |
| 3587268 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 52.0 | 5.01e-01 | 100.0% | 94.2% |
| 3257603 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.56 | 46.0 | 4.40e-01 | 87.6% | 95.0% |
| 3247792 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.56 | 44.0 | 4.29e-01 | 84.8% | 95.0% |
| 3855663 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.56 | 45.0 | 4.23e-01 | 86.7% | 96.2% |
| 3266685 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.55 | 50.0 | 2.83e-01 | 100.0% | 15.6% |
| 3744517 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.54 | 44.0 | 4.26e-01 | 87.6% | 90.0% |
| 3993896 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 48.0 | 4.38e-01 | 99.0% | 84.7% |
| 3326221 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 44.0 | 4.58e-01 | 93.3% | 96.8% |
| 3499053 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.53 | 43.0 | 3.94e-01 | 87.6% | 96.3% |
| 4438077 | 2484.1.1.204 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 | 0.52 | 42.0 | 2.86e-01 | 87.6% | 99.5% |
| 4438762 | 243.3.1.3 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY | 0.52 | 32.0 | 3.50e-01 | 93.3% | 75.3% |
| 146272 | 243.3.1.3 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY | 0.51 | 30.0 | 3.33e-01 | 93.3% | 72.3% |
| 4152544 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.51 | 41.0 | 3.67e-01 | 86.7% | 97.2% |
| 3463169 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.50 | 43.0 | 2.73e-01 | 93.3% | 89.4% |
| 4355655 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.50 | 41.0 | 3.94e-01 | 89.5% | 99.2% |
| 3307229 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.50 | 43.0 | 2.78e-01 | 93.3% | 90.3% |