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IMGVR_UViG_3300014786_000083-3300014786-Ga0169450_1037945
Arc-VirIMGVR_UViG_3300014786_000083-3300014786-Ga0169450_1037945
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-90
Domain cluster:
rep: IMGVR_UViG_3300029221_000043-3300029221-Ga0168075_10384911__D40-123
D2
high
residues 107-204
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16795.11 best | Phage_integr_3 | 41.8 | 1.50e-10 | 99.0% | 51.5% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3uxuA00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.80 | 72.0 | 6.01e-01 | 100.0% | 59.1% |
| 3k44B00 | 3.30.2450.30 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.55 | 41.0 | 3.72e-01 | 79.6% | 98.6% |
| 2avxA00 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.54 | 40.0 | 3.42e-01 | 79.6% | 72.5% |
| 3d8dA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 37.0 | 3.35e-01 | 71.4% | 97.8% |
| 5dx9A01 | 3.30.70.1020 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trehalose-6-phosphate phosphatase related protein; domain 2 | 0.51 | 27.0 | 3.06e-01 | 96.9% | 68.1% |
| 1u04A04 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.50 | 42.0 | 3.34e-01 | 96.9% | 87.1% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5041911 | 101.1.8.8 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integr_3 | 0.89 | 82.0 | 6.71e-01 | 98.0% | 60.0% |
| 5012889 | 101.1.8.8 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integr_3 | 0.85 | 80.0 | 7.78e-01 | 100.0% | 97.1% |
| 5012504 | 101.1.8.8 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integr_3 | 0.83 | 78.0 | 6.22e-01 | 100.0% | 57.2% |
| 3943931 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.78 | 70.0 | 6.64e-01 | 100.0% | 81.7% |
| 3945160 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.77 | 71.0 | 6.42e-01 | 100.0% | 92.3% |
| 5018485 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.77 | 70.0 | 5.79e-01 | 100.0% | 87.6% |
| 4034079 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.76 | 68.0 | 6.04e-01 | 96.9% | 91.9% |
| 4028841 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.73 | 67.0 | 6.01e-01 | 100.0% | 88.9% |
| 5032561 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.73 | 67.0 | 6.61e-01 | 100.0% | 96.2% |
| 4940634 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.73 | 65.0 | 5.75e-01 | 100.0% | 93.8% |
| 3953772 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.56 | 36.0 | 3.33e-01 | 70.4% | 49.6% |
| 3909375 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.56 | 40.0 | 3.62e-01 | 75.5% | 69.6% |
| 3937776 | 4.1.1.308 ↗ | beta barrels › SH3 › SH3 › SH3 › PF31073 | 0.55 | 33.0 | 3.71e-01 | 79.6% | 78.1% |
| None | — | 0.54 | 38.0 | 3.51e-01 | 73.5% | 73.1% | |
| 3630369 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.54 | 39.0 | 3.55e-01 | 76.5% | 70.4% |
| 4024605 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 37.0 | 2.79e-01 | 70.4% | 44.7% |
| 4584323 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.54 | 31.0 | 3.89e-01 | 98.0% | 95.0% |
| 3487656 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 38.0 | 3.84e-01 | 73.5% | 97.9% |
| 3423721 | 207.1.1.97 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_RPS2 | 0.53 | 41.0 | 2.47e-01 | 82.7% | 17.4% |
| 4027836 | 220.1.1.13 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 | 0.53 | 41.0 | 3.61e-01 | 83.7% | 84.7% |
| 3475799 | 220.1.1.7 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS | 0.53 | 37.0 | 3.49e-01 | 74.5% | 85.6% |
| 3199439 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 42.0 | 3.49e-01 | 91.8% | 89.5% |
| 3489487 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.51 | 37.0 | 3.62e-01 | 75.5% | 100.0% |
| 5081178 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.50 | 35.0 | 3.21e-01 | 73.5% | 95.7% |