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IMGVR_UViG_3300014798_000055-3300014798-Ga0134382_100139020
Arc-VirIMGVR_UViG_3300014798_000055-3300014798-Ga0134382_100139020
Identity
- Kingdom:
- archaea
Quality
85.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-82
Domain cluster:
rep: NC_031927.1__YP_009323018.1__BOW86_gp085__00085__D3-79
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01541.31 best | GIY-YIG | 42.3 | 1.00e-10 | 100.0% | 88.5% |
D2
high
residues 266-306
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07453.20 best | NUMOD1 | 32.7 | 9.30e-08 | 90.2% | 94.6% |
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u3eM02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.83 | 70.0 | 5.94e-01 | 100.0% | 57.4% |
| 2pbiA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 48.0 | 3.68e-01 | 73.2% | 59.6% |
| 3fdjA03 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.67 | 53.0 | 3.81e-01 | 92.7% | 71.1% |
| 3cynB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.67 | 48.0 | 3.18e-01 | 78.0% | 66.5% |
| 4cy8A03 | 3.40.30.120 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › | 0.65 | 44.0 | 3.01e-01 | 73.2% | 46.8% |
| 2dhoA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.65 | 51.0 | 3.36e-01 | 100.0% | 48.4% |
| 3lwaA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.64 | 45.0 | 3.09e-01 | 75.6% | 65.6% |
| 3fk8A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.61 | 44.0 | 3.18e-01 | 78.0% | 70.2% |
| 2oap202 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 49.0 | 2.95e-01 | 90.2% | 76.9% |
| 4htlA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.59 | 45.0 | 3.57e-01 | 92.7% | 48.0% |
| 1wzcA02 | 3.30.980.20 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Putative mannosyl-3-phosphoglycerate phosphatase; domain 2 | 0.58 | 42.0 | 3.38e-01 | 78.0% | 51.8% |
| 1t0fA01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.58 | 42.0 | 2.83e-01 | 78.0% | 19.8% |
| 2k7iA01 | 3.30.160.160 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YegP-like | 0.56 | 39.0 | 3.79e-01 | 75.6% | 75.0% |
| 6j9eJ00 | 3.30.160.560 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.56 | 42.0 | 3.73e-01 | 87.8% | 72.7% |
| 3u3wA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.55 | 42.0 | 3.63e-01 | 85.4% | 89.9% |
| 3emiA00 | 3.90.1780.10 | Alpha Beta › Alpha-Beta Complex › Trimeric adhesin › Trimeric adhesin | 0.55 | 38.0 | 2.96e-01 | 92.7% | 28.2% |
| 3ocmB00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.55 | 38.0 | 2.69e-01 | 73.2% | 21.9% |
| 4o5fA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 43.0 | 3.21e-01 | 97.6% | 94.5% |
| 2derA02 | 2.30.30.280 | Mainly Beta › Roll › SH3 type barrels. › Adenine nucleotide alpha hydrolases-like domains | 0.54 | 43.0 | 3.81e-01 | 100.0% | 76.8% |
| 3w7tA03 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.53 | 41.0 | 2.39e-01 | 92.7% | 20.6% |
| 1qwkA00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.53 | 44.0 | 2.54e-01 | 90.2% | 23.1% |
| 2z2mD01 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.52 | 36.0 | 3.37e-01 | 78.0% | 100.0% |
| 4iknA01 | 2.60.40.1170 | Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B | 0.52 | 44.0 | 3.08e-01 | 100.0% | 72.0% |
| 3d6wB02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.52 | 35.0 | 3.61e-01 | 78.0% | 82.1% |
| 2fkbC00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.52 | 42.0 | 2.97e-01 | 100.0% | 43.1% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4384880 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.87 | 75.0 | 5.89e-01 | 100.0% | 47.1% |
| 1030873 | 101.1.14.1 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-TevI_DNA-bd | 0.87 | 66.0 | 5.71e-01 | 100.0% | 54.0% |
| 3588934 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.86 | 47.0 | 3.95e-01 | 87.8% | 33.8% |
| 4414927 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.86 | 74.0 | 6.29e-01 | 100.0% | 62.3% |
| 4944276 | 7565.1.1.0 ↗ | a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like | 0.73 | 52.0 | 3.20e-01 | 75.6% | 16.4% |
| 4103292 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.69 | 48.0 | 3.96e-01 | 73.2% | 88.0% |
| 3976684 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.67 | 46.0 | 3.75e-01 | 70.7% | 36.3% |
| 4996620 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 49.0 | 3.84e-01 | 82.9% | 74.4% |
| 3592956 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 54.0 | 4.55e-01 | 100.0% | 65.3% |
| 4982570 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.64 | 52.0 | 4.37e-01 | 90.2% | 77.1% |
| 3957585 | 2484.1.1.144 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDD_Tnp_IS110 | 0.63 | 53.0 | 4.16e-01 | 100.0% | 74.7% |
| 4964555 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.63 | 51.0 | 4.41e-01 | 90.2% | 83.1% |
| 4153905 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.61 | 44.0 | 3.50e-01 | 78.0% | 34.0% |
| 4023115 | 2003.1.2.7 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 | 0.60 | 44.0 | 2.61e-01 | 80.5% | 58.9% |
| 3781153 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.58 | 47.0 | 3.74e-01 | 92.7% | 67.8% |
| 3401112 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.58 | 48.0 | 4.32e-01 | 97.6% | 81.7% |
| 5008387 | 2003.2.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Molybdopterin | 0.56 | 42.0 | 2.58e-01 | 82.9% | 49.3% |
| 4398468 | 4.6.1.5 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › tRNA_Me_trans_M | 0.55 | 43.0 | 3.79e-01 | 100.0% | 69.3% |
| 5059758 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.54 | 41.0 | 3.55e-01 | 100.0% | 88.2% |
| 3212962 | 5001.1.1.106 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str | 0.53 | 36.0 | 2.20e-01 | 75.6% | 50.0% |
D3
medium
residues 154-254
Domain cluster:
rep: MW749006.1__QXN70524.1__AGENTSMITH_120__00118__D209-286
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07453.20 best | NUMOD1 | 30.1 | 6.10e-07 | 35.6% | 89.2% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3368299 | 4121.1.1.2 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like | 0.57 | 42.0 | 3.13e-01 | 78.2% | 68.2% |
| 3296049 | 4121.1.1.2 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like | 0.57 | 41.0 | 3.24e-01 | 77.2% | 75.0% |
| 4971324 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.51 | 25.0 | 2.68e-01 | 78.2% | 51.1% |
| 5017794 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.50 | 28.0 | 2.98e-01 | 77.2% | 60.0% |