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IMGVR_UViG_3300014827_000006-3300014827-Ga0120171_10003323

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300014827_000006-3300014827-Ga0120171_10003323 ↗
Kingdom:: archaea

Quality

84.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-58

PDB

Domain cluster: representative

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2oyoA02	1.20.1290.10	Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like	0.75	57.0	4.35e-01	83.9%	36.8%
1q6aA00	1.10.1240.30	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain	0.71	58.0	4.63e-01	89.3%	52.3%
1v4aA01	1.10.4050.10	Mainly Alpha › Orthogonal Bundle › Nucleotidyltransferase substrate binding subunit/domain fold › Glutamine synthase adenylyltransferase GlnE	0.69	55.0	4.44e-01	96.4%	45.0%
1khtB00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.69	57.0	3.95e-01	91.1%	86.4%
2kvsA00	1.10.150.260	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › YozE SAM-like	0.68	46.0	4.15e-01	76.8%	50.0%
3hugA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.64	56.0	5.00e-01	98.2%	86.3%
3keyA02	3.30.1370.230	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain	0.63	52.0	4.44e-01	89.3%	79.5%
5ywwA01	3.40.50.1010	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease	0.61	43.0	3.43e-01	78.6%	36.5%
2plrA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.60	51.0	3.54e-01	100.0%	85.4%
3l4aA00	1.10.238.20	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain	0.59	41.0	3.22e-01	87.5%	33.9%
4z7xB00	3.40.30.10	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin	0.56	48.0	3.27e-01	98.2%	63.5%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3701208	102.5.1.0 ↗	alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins	0.76	49.0	4.79e-01	76.8%	61.7%
3711095	3075.1.1.0 ↗	a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA	0.73	55.0	4.98e-01	80.4%	84.0%
4432476	2006.1.1.1 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase	0.73	54.0	3.40e-01	100.0%	15.6%
3243507	101.1.1.289 ↗	alpha arrays › HTH › HTH › Three-helical HTH › HOCHOB	0.72	52.0	4.94e-01	76.8%	81.5%
4959768	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.70	48.0	4.72e-01	71.4%	71.7%
3975658	101.1.1.58 ↗	alpha arrays › HTH › HTH › Three-helical HTH › HTH_18	0.68	50.0	4.26e-01	78.6%	71.1%
2589777	3176.1.1.1 ↗	alpha duplicates or obligate multimers › Head fiber protein gp8.5 fibrous portion › Head fiber protein gp8.5 fibrous portion › Head fiber protein gp8.5 fibrous portion › Phage_head_fibr	0.64	40.0	2.87e-01	100.0%	21.8%
4935132	2004.1.1.79 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin	0.62	54.0	3.60e-01	100.0%	79.1%
4952348	2484.1.1.0 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like	0.61	52.0	3.58e-01	94.6%	82.9%
3960598	179.1.1.0 ↗	alpha bundles › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like	0.59	46.0	4.75e-01	83.9%	90.6%
4311936	101.1.1.76 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2	0.56	38.0	3.81e-01	73.2%	68.3%