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IMGVR_UViG_3300014887_000003-3300014887-Ga0180302_1000002781
Arc-VirIMGVR_UViG_3300014887_000003-3300014887-Ga0180302_1000002781
Identity
- Kingdom:
- archaea
Quality
72.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 18-61
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2apoB00 | 2.20.28.40 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › H/ACA ribonucleoprotein complex, subunit Nop10 | 0.81 | 50.0 | 4.67e-01 | 70.5% | 50.9% |
| 2lcqA02 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.78 | 58.0 | 6.13e-01 | 100.0% | 92.1% |
| 3axsA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.77 | 60.0 | 3.52e-01 | 84.1% | 13.0% |
| 2gnrA01 | 6.10.30.10 | Special › Helix non-globular › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › | 0.73 | 50.0 | 4.34e-01 | 100.0% | 46.4% |
| 1yuzA02 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.72 | 50.0 | 5.24e-01 | 72.7% | 86.8% |
| 4tpuA02 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.67 | 50.0 | 5.35e-01 | 100.0% | 97.3% |
| 2conA00 | 6.20.210.10 | Special › Other non-globular › Herpes Virus-1 › Nin one binding (NOB1), Zn-ribbon-like | 0.66 | 53.0 | 4.46e-01 | 100.0% | 51.9% |
| 4aybP00 | 2.20.28.30 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase ii, chain L | 0.66 | 47.0 | 4.75e-01 | 81.8% | 88.6% |
| 1dfxA00 | 2.60.40.730 | Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain | 0.65 | 55.0 | 4.08e-01 | 100.0% | 86.4% |
| 2j9uB00 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.64 | 44.0 | 4.40e-01 | 72.7% | 97.9% |
| 2csvA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.56 | 37.0 | 3.23e-01 | 70.5% | 41.7% |
| 2pn0A02 | 3.10.50.30 | Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain | 0.54 | 38.0 | 3.23e-01 | 77.3% | 80.5% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5076013 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.86 | 59.0 | 6.05e-01 | 72.7% | 100.0% |
| 4987796 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.83 | 59.0 | 6.47e-01 | 75.0% | 97.1% |
| 5036844 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.83 | 63.0 | 6.31e-01 | 95.5% | 80.0% |
| 4931152 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.83 | 58.0 | 6.41e-01 | 75.0% | 97.1% |
| 4933086 | 375.1.1.181 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PALP | 0.83 | 61.0 | 4.40e-01 | 79.5% | 29.2% |
| 4937591 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.81 | 58.0 | 3.43e-01 | 75.0% | 10.5% |
| 4967717 | 375.1.1.181 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PALP | 0.81 | 60.0 | 6.59e-01 | 79.5% | 100.0% |
| 5071328 | 375.1.1.48 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF35_N | 0.81 | 59.0 | 5.45e-01 | 100.0% | 61.8% |
| 3277720 | 375.1.1.185 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_8 | 0.80 | 56.0 | 5.88e-01 | 75.0% | 97.5% |
| 5036185 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.80 | 57.0 | 5.17e-01 | 100.0% | 56.7% |
| 5022651 | 375.11.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain in CopZ › Zinc-binding domain in CopZ | 0.78 | 55.0 | 4.69e-01 | 75.0% | 51.4% |
| 4390953 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.78 | 51.0 | 5.55e-01 | 70.5% | 100.0% |
| 3619241 | 375.10.1.2 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE | 0.75 | 51.0 | 4.49e-01 | 70.5% | 48.4% |
| 5052735 | 375.1.1.64 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RUBY_RBDX | 0.74 | 51.0 | 5.43e-01 | 72.7% | 97.1% |
| 1411279 | 375.1.1.64 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RUBY_RBDX | 0.73 | 49.0 | 5.17e-01 | 70.5% | 84.6% |
| 3500548 | 375.5.1.1 ↗ | few secondary structure elements › Rubredoxin-like › NOB1 zinc finger-like › NOB1 zinc finger-like › NOB1_Zn_bind | 0.72 | 60.0 | 5.42e-01 | 100.0% | 68.3% |
| 3924201 | 375.10.1.2 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE | 0.71 | 47.0 | 4.19e-01 | 70.5% | 46.9% |
| 4933617 | 375.11.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain in CopZ › Zinc-binding domain in CopZ › NAPRTase_C | 0.71 | 51.0 | 4.24e-01 | 77.3% | 45.6% |
| 3508549 | 375.10.1.2 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE | 0.71 | 46.0 | 4.66e-01 | 70.5% | 66.7% |
| 4175643 | 375.5.1.1 ↗ | few secondary structure elements › Rubredoxin-like › NOB1 zinc finger-like › NOB1 zinc finger-like › NOB1_Zn_bind | 0.70 | 58.0 | 4.88e-01 | 100.0% | 54.7% |
| 3393166 | 375.10.1.2 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE | 0.70 | 46.0 | 4.10e-01 | 70.5% | 46.2% |
| 4028836 | 375.5.1.1 ↗ | few secondary structure elements › Rubredoxin-like › NOB1 zinc finger-like › NOB1 zinc finger-like › NOB1_Zn_bind | 0.70 | 56.0 | 5.08e-01 | 100.0% | 64.6% |
| 3484771 | 375.5.1.1 ↗ | few secondary structure elements › Rubredoxin-like › NOB1 zinc finger-like › NOB1 zinc finger-like › NOB1_Zn_bind | 0.70 | 59.0 | 5.35e-01 | 100.0% | 70.0% |
| 3292773 | 375.1.1.132 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › NOB1_Zn_bind | 0.70 | 57.0 | 5.38e-01 | 100.0% | 74.5% |
| 3270699 | 375.5.1.1 ↗ | few secondary structure elements › Rubredoxin-like › NOB1 zinc finger-like › NOB1 zinc finger-like › NOB1_Zn_bind | 0.69 | 58.0 | 4.45e-01 | 100.0% | 41.0% |
| 4326569 | 375.10.1.2 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE | 0.69 | 45.0 | 4.04e-01 | 70.5% | 46.2% |
| 4951043 | 375.1.1.22 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DNA_RNApol_7kD | 0.69 | 51.0 | 5.22e-01 | 81.8% | 83.7% |
| 4325327 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 47.0 | 5.07e-01 | 72.7% | 94.3% |
| 3819271 | 375.10.1.2 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE | 0.68 | 45.0 | 4.00e-01 | 70.5% | 46.2% |
| 3448510 | 375.10.1.2 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE | 0.66 | 46.0 | 4.12e-01 | 75.0% | 53.8% |
| 4432935 | 375.10.1.2 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE | 0.66 | 44.0 | 3.91e-01 | 70.5% | 46.2% |
| 3188296 | 375.1.1.132 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › NOB1_Zn_bind | 0.66 | 58.0 | 5.19e-01 | 100.0% | 71.7% |
| 3699298 | 375.5.1.1 ↗ | few secondary structure elements › Rubredoxin-like › NOB1 zinc finger-like › NOB1 zinc finger-like › NOB1_Zn_bind | 0.65 | 56.0 | 5.06e-01 | 100.0% | 71.7% |
| 4983060 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.64 | 53.0 | 4.50e-01 | 100.0% | 63.7% |
| 3914802 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.57 | 47.0 | 4.21e-01 | 95.5% | 95.4% |
| 2392246 | 352.1.1.0 ↗ | a+b complex topology › Noncollagenous (NC1) domain of collagen IV › Noncollagenous (NC1) domain of collagen IV › Noncollagenous (NC1) domain of collagen IV | 0.51 | 37.0 | 2.93e-01 | 86.4% | 67.5% |