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IMGVR_UViG_3300014887_000089-3300014887-Ga0180302_100046506

Arc-Vir

IMGVR_UViG_3300014887_000089-3300014887-Ga0180302_100046506

Quality

85.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-109
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3u1kB04 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.70 43.0 5.16e-01 93.3% 90.3%
1lfpA03 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.69 39.0 4.52e-01 92.4% 78.1%
4aimA03 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.68 42.0 5.00e-01 92.4% 91.5%
2fgcA03 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.67 36.0 4.07e-01 97.1% 69.7%
1x9zA02 3.30.1370.100 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › MutL, C-terminal domain, regulatory subdomain 0.67 39.0 4.17e-01 94.3% 67.4%
4i0wA00 3.30.70.2980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 41.0 4.40e-01 100.0% 73.9%
1whvA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.64 39.0 3.97e-01 93.3% 63.0%
4p72A04 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.63 39.0 4.53e-01 94.3% 86.8%
6u9hF02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.63 36.0 4.05e-01 93.3% 74.0%
2f1fA02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.63 36.0 4.07e-01 93.3% 74.4%
3pcoB04 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.61 38.0 4.34e-01 94.3% 86.7%
1lxnA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 35.0 3.66e-01 71.4% 60.2%
1bqnA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.61 40.0 4.17e-01 92.4% 73.4%
2cxiA03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.61 37.0 4.40e-01 93.3% 91.4%
7xhzA01 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.61 42.0 4.01e-01 70.5% 99.2%
2fm8B00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.61 51.0 4.89e-01 93.3% 92.0%
4nogA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.60 49.0 4.23e-01 94.3% 55.0%
4mo0A00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.58 36.0 4.08e-01 82.9% 82.3%
1jg8A02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 45.0 4.63e-01 94.3% 92.7%
7qddB01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 36.0 4.15e-01 73.3% 91.8%
5o5cB02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.56 45.0 4.29e-01 95.2% 72.7%
1d5aA03 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.56 39.0 3.40e-01 72.4% 74.4%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.55 40.0 4.24e-01 95.2% 85.1%
4erdA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 36.0 3.66e-01 72.4% 66.7%
4q5eA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 36.0 4.13e-01 81.0% 94.7%
1yqhA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 33.0 3.40e-01 100.0% 61.5%
1ucrB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 33.0 3.79e-01 73.3% 85.3%
7bkea01 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 30.0 3.43e-01 71.4% 74.3%
2l9dA00 3.30.70.2340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein PF12112 family, DUF3579 0.53 39.0 3.93e-01 95.2% 77.8%
5oyhD00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.52 43.0 3.54e-01 93.3% 49.7%
1azsA00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.52 43.0 3.50e-01 93.3% 48.4%
4qmfD02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.52 36.0 3.82e-01 94.3% 80.4%
4ritA01 3.90.1150.170 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.52 43.0 3.42e-01 96.2% 43.1%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 32.0 3.54e-01 89.5% 77.4%
1vk8A00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 33.0 3.48e-01 93.3% 74.2%
3c0wA02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.50 36.0 3.68e-01 91.4% 75.7%
2qvoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 31.0 3.36e-01 92.4% 73.6%
3n89A02 3.30.310.210 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.50 46.0 4.15e-01 98.1% 97.1%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4988179 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.82 42.0 5.33e-01 92.4% 82.8%
5063669 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.78 41.0 4.85e-01 71.4% 73.3%
3862939 327.11.2.53 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF27824 0.78 39.0 4.27e-01 72.4% 57.8%
5022563 327.11.2.83 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_DUF2096_C 0.77 39.0 4.80e-01 71.4% 78.5%
3568112 327.11.2.53 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF27824 0.75 39.0 5.13e-01 93.3% 90.0%
4955445 304.117.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC 0.74 44.0 5.23e-01 72.4% 88.6%
4048587 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.73 41.0 4.93e-01 92.4% 84.3%
3659062 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.71 42.0 5.10e-01 92.4% 90.0%
5060568 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.69 35.0 4.34e-01 72.4% 81.7%
4953268 327.11.2.83 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_DUF2096_C 0.69 41.0 5.07e-01 77.1% 96.9%
4037308 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.67 41.0 4.50e-01 75.2% 75.3%
3218171 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.65 41.0 4.76e-01 93.3% 88.0%
1956182 304.164.1.0 a+b two layers › Alpha-beta plaits › Hypothetical protein NegoA.19184.a C-terminal domain › Hypothetical protein NegoA.19184.a C-terminal domain 0.64 36.0 4.16e-01 93.3% 77.8%
3738415 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.64 35.0 3.83e-01 93.3% 63.5%
3494477 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.64 37.0 4.52e-01 93.3% 92.3%
4397598 327.19.1.1 a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › MutL_C 0.64 37.0 4.01e-01 93.3% 66.7%
4058826 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.63 38.0 4.21e-01 93.3% 75.3%
4169295 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.62 39.0 4.23e-01 92.4% 74.4%
4073474 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.62 38.0 4.14e-01 72.4% 75.3%
3390067 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.62 38.0 4.14e-01 93.3% 75.3%
4440295 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.61 37.0 4.11e-01 72.4% 75.3%
4229550 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.61 39.0 4.25e-01 96.2% 78.8%
4580006 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.61 39.0 4.25e-01 93.3% 78.8%
4668511 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.60 38.0 4.15e-01 93.3% 77.6%
5027716 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.60 38.0 4.42e-01 72.4% 89.3%
4097732 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.60 37.0 4.04e-01 72.4% 75.3%
4073708 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.60 38.0 4.09e-01 93.3% 74.4%
5056954 305.1.1.0 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.60 38.0 4.36e-01 81.0% 90.7%
4033708 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.59 38.0 4.04e-01 93.3% 74.4%
5008984 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.59 38.0 4.12e-01 96.2% 76.7%
1192849 3016.1.1.2 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.59 47.0 4.86e-01 95.2% 92.0%
4586240 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.59 36.0 3.98e-01 72.4% 75.3%
3960541 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.59 37.0 4.12e-01 94.3% 81.2%
4380325 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.59 37.0 4.06e-01 93.3% 77.6%
3496306 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.59 38.0 4.44e-01 81.9% 98.6%
4093644 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.59 37.0 4.00e-01 93.3% 74.4%
5047775 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.59 41.0 4.50e-01 71.4% 98.8%
3404981 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.58 39.0 4.24e-01 81.9% 84.7%
5030795 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.58 37.0 4.06e-01 71.4% 78.8%
4612385 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.58 37.0 3.99e-01 93.3% 77.6%
3164638 2006.1.1.37 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP+Hydrolase_3 0.58 40.0 3.04e-01 71.4% 42.7%
5565 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.58 45.0 4.68e-01 95.2% 91.7%
5063456 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.57 38.0 4.35e-01 93.3% 94.7%
4055520 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.56 35.0 3.87e-01 93.3% 77.6%
4073767 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.56 45.0 4.59e-01 99.0% 88.6%
3718390 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 31.0 3.52e-01 70.5% 76.0%
4931371 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.54 47.0 4.48e-01 100.0% 90.0%
3781863 601.23.1.1 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III 0.54 43.0 3.03e-01 84.8% 85.2%
5070287 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.53 46.0 4.42e-01 100.0% 92.8%
146734 881.3.1.1 a+b three layers › Mog1p/PsbP-like › Outer membrane-associated lipoprotein TP0453 › Outer membrane-associated lipoprotein TP0453 › TP0453 0.52 45.0 3.41e-01 93.3% 90.8%
5000791 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.52 46.0 4.46e-01 100.0% 90.8%
4986585 101.1.2.650 alpha arrays › HTH › HTH › winged helix domain › DUF7343 0.52 30.0 3.69e-01 85.7% 98.3%
3593893 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.52 39.0 3.23e-01 93.3% 43.6%
4375524 2006.1.1.7 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP 0.52 38.0 2.96e-01 78.1% 51.4%
5029885 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.52 45.0 4.38e-01 100.0% 89.6%
4994983 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 29.0 3.37e-01 74.3% 81.4%
5041860 2006.1.1.11 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 0.51 36.0 2.89e-01 73.3% 44.9%
5047455 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.51 44.0 4.26e-01 99.0% 84.2%
3587362 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.50 31.0 2.85e-01 89.5% 46.0%
5036041 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 31.0 3.27e-01 77.1% 68.4%